Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium216g00002 ATGAAGAAATTTGATCAATCTATTGAGTCGGAGATTATTAGAATGCCAAAGGAGTTTAGCTACAAGGAGCTGAAATTTGCCACTAAGGGGTTCAGTGCTAATAGGGTCATTAGTCATGGTGCTTTTGAGACCATGTACAAGGGTGTGCTGCATGAGAGTGGTGACACTGTTGCGGTGAAGAGGTGTAATCATAGTGGTCAAGGTAAGAGTGAGTTTTTGTCCGAGTTGTCTATAATTGGGAGTCTCAGGCATCGTAATCTGGTTCACCTTCAAGGTTGGTGCCATGAGAAAGGTGAGATTTTGTTGGTGTATGACTTGATGCCCAATGGGAGTTTAGATAAGGCTTTGTATGAGGCTAGGATGCCTTTGTCATGGCCTCACAGGCTCAAAATTTTGTTAGGTGTGTCATCTGTGTTGGCCTACTTGCATCACGAATGTGAAAACCAGGTAATTCATAGGGACATTAAGACTAGTAACATTATGTTAGATGAAGGGTTCAATGCTCGGTTAGGCGATTTTGGTTTAGCAAGACAAACACAACATGATAAGTCTCCTGATGCCACTGTGGCTGCCGGAACAATGGGGTATCTTGCCCCAGAGTATGTTCTTACTGGAAGAGCAACTGAGAAAACTGATGTGTTTAGCTATGGTGCGGTGGTTCTTGAGGTGGCCTGTGGGAGGAGGCCTATTGAGAAAGATGCCGCTGCAAATGGTAAAGTTGGGGTTAGCAGCAATTTGGTGGAACGGGTTTGGAGTTTGCATCAAGAAGGTAAGTTGCTAACGGCAGCTGATCCAAGACTTGAAGGTGAGTTTGAAGAAGGGGAAATGAGGAGGGTACTCTTAGTTGGGTTAGCTTGTTCACACCCAGATTCAATGGCAAGACCAACTATGAGGGGTGCAGTTCAGATGCTTCTTGGAGAGGCTGAAGTGCCTATTGTCCCTAGAGCCAAACCGTCTACTAGTTACAGCACTTCTCACCTCTTATTGAGCCTGCAAGATAGTGAATCTGACTGTAATAATGCTATGATCACCATCTCTACCTCCTCTTCAGAGAACACCCTCAGTGACAGACATATACTCTGA 1083 0.4478 MKKFDQSIESEIIRMPKEFSYKELKFATKGFSANRVISHGAFETMYKGVLHESGDTVAVKRCNHSGQGKSEFLSELSIIGSLRHRNLVHLQGWCHEKGEILLVYDLMPNGSLDKALYEARMPLSWPHRLKILLGVSSVLAYLHHECENQVIHRDIKTSNIMLDEGFNARLGDFGLARQTQHDKSPDATVAAGTMGYLAPEYVLTGRATEKTDVFSYGAVVLEVACGRRPIEKDAAANGKVGVSSNLVERVWSLHQEGKLLTAADPRLEGEFEEGEMRRVLLVGLACSHPDSMARPTMRGAVQMLLGEAEVPIVPRAKPSTSYSTSHLLLSLQDSESDCNNAMITISTSSSENTLSDRHIL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium216g00002 360 PANTHER - 11 314 - -
Vium216g00002 360 FunFam L-type lectin-domain containing receptor kinase VIII.1 107 322 - -
Vium216g00002 360 SMART serkin_6 31 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium216g00002 360 SUPERFAMILY Protein kinase-like (PK-like) 13 341 IPR011009 -
Vium216g00002 360 Gene3D Transferase(Phosphotransferase) domain 1 107 311 - -
Vium216g00002 360 Gene3D Phosphorylase Kinase; domain 1 2 106 - -
Vium216g00002 360 ProSiteProfiles Protein kinase domain profile. 31 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium216g00002 360 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672|GO:0006468
Vium216g00002 360 FunFam L-type lectin-domain containing receptor kinase VIII.1 1 106 - -
Vium216g00002 360 Pfam Protein kinase domain 34 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium216g00002 Vium-Chr216 19569 21697 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium216g00002 2 344 Receptor kinase-like Gene Family AT3G53380 72.571 0.0 526
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vium216g00002 Pkinase 4.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium216g00002 - - vum:124829173 713.761