Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2169g00005 ATGGCTTCAACTTCAGCATCTTGTTCCTTTACCATTAGTGTGTTATTCCTCATTTTTGTGCACCTGTCTTGTTTCGCAAACAACCTTAATGCAAAGCACAGTCACAACCATCGCAAGCCTCAACACACTGAAAATCCTCCCTTGAATCCAAGACTTCACATGGCCTTTCTTGGCCTCCAAGCATGGAAGCAAGTCATCTACTCAGACCCAAATAACTTCACTGCCAATTGGGTAGGTCCTTCAGTCTGCAACTACACAGGTGTGTACTGTGCTCCCTCAGTTGATGATCCTGAAGTGAGAGTTGTGGCTGGCATTGACCTTAACTTTGGAGACATAGCAGGGTTCCTACCCGATGAAATAGGCCTTCTGTCAGACCTTGCACTCCTTCACCTTAGTAACAACCGCTTCTGTGGCATTCTGCCAATGTCCTTAACCAACCTCACTCTACTCTATGAGCTTGATATTAGCAGCAACAGGTTTGTTGGTCCCTTTCCTTTGGTTTTGCTTTCCCTTCCTATGCTCACCTACCTTGACCTCCGCTACAATGAATTTGAAGGGCCATTGCCTCCTCAACTATTCAACAAAACCTTTGATGCCATTTTCCTCAACAACAACCGCTTCAGCAGTTCTATACCTCCAAACTTGGGCAAAAACTCAGTTTCTGTCTTGGTCTTTGCCAACAACAAATTTGGAGGGTGTCTTCCAGAGAGCATAGTGAACTTTGCTGACACTTTGGAGGAGCTTGTGCTAATCAACACTAGCTTGTCAGGTTGTTTGCCACAGCAAGTGGGGTTTCTCTACAAACTTAGAGTGCTGGATGTGAGTTTCAACAGCATTGTTGGCCCCATTCCTTATAGCCTTGCAGGGTTGTCTCACTTGGAGCAACTAAACCTGGGACACAACATGATGAGTGGCACTGTCCCTATGGGGGTTTGTGAGTTGCCAAACTTGGCAAACTTCACTTTCTCTTACAATTTCTTCTGTGAGGAAGAGGGCATCTGTCAGAACTTGACATCAAAGAGAATAGTGTTTGATGACAGAAGGAACTGTTTGCCAGAGAAGCCACTGCAGAGGAGCCAAAAGGAATGCAGTGCCAAACTTGAACACCCAGTTGATTGCTCTGAGCTTTGCTGTGTTGTTGGGAGCAATGTCTCTGCTGGTTCAGTGGCTGTTCCACCTGCTGCTATTCCCTCAGCAATGCCTGTATCTGCTCCTCTTCTTGCACCAAGCCACCCTTAA 1239 0.4617 MASTSASCSFTISVLFLIFVHLSCFANNLNAKHSHNHRKPQHTENPPLNPRLHMAFLGLQAWKQVIYSDPNNFTANWVGPSVCNYTGVYCAPSVDDPEVRVVAGIDLNFGDIAGFLPDEIGLLSDLALLHLSNNRFCGILPMSLTNLTLLYELDISSNRFVGPFPLVLLSLPMLTYLDLRYNEFEGPLPPQLFNKTFDAIFLNNNRFSSSIPPNLGKNSVSVLVFANNKFGGCLPESIVNFADTLEELVLINTSLSGCLPQQVGFLYKLRVLDVSFNSIVGPIPYSLAGLSHLEQLNLGHNMMSGTVPMGVCELPNLANFTFSYNFFCEEEGICQNLTSKRIVFDDRRNCLPEKPLQRSQKECSAKLEHPVDCSELCCVVGSNVSAGSVAVPPAAIPSAMPVSAPLLAPSHP 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2169g00005 412 Gene3D Ribonuclease Inhibitor 218 377 IPR032675 -
Vium2169g00005 412 SUPERFAMILY L domain-like 63 342 - -
Vium2169g00005 412 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 19 383 - -
Vium2169g00005 412 Pfam Leucine rich repeat 244 302 IPR001611 GO:0005515
Vium2169g00005 412 Gene3D Ribonuclease Inhibitor 57 217 IPR032675 -
Vium2169g00005 412 FunFam Leucine-rich repeat extensin-like protein 1 56 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2169g00005 Vium-Chr2169 88941 90562 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2169g00005 49 378 Leucine-rich Repeat extension Gene Families AT3G24480 54.683 9.94e-134 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2169g00005 - - gmx:100782629 725.317