Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2169g00004 ATGGTGTGTTTGGGGTTTGACATGGTTGAGGTTGACTTTCAAAGGTTGGAACTTGAGAGGAGGGAAGTGAGGATTTTGTTGAGAATTTCATGTGGGTGGTTGGTTTTTTTGTTGTTTCTGAGTCCTGTGGCGGGTTTGAGACCCTTAAGGGATAAAACCAATTCCTGGGGTGATGAGTGGGTTTTTACGAGAAAAGACGAAAGTGACTTAGGTCCATTTTCACAATGGAACATAACTGGAACTTACAGAGGGACTTGGAAGTTTTTAGATACAACAAATGGTTCTACAAGATTTCCAGACATCAGAAAAATAAATGGAAATTCTGTAATTGAATTAGTTAGTGTGCCAACAAAGATAACTGGTGTACATTATGTGCAGGGGGTAGTCATATTCCATGATGTATTTGACAATGAATACAATGTTGGTGGTGCTCAAATCAGAGTAGAAGGTGTATATATATGGCCTTATAGGCAGCTTCGAATGGTAGCCAACAGTGGTAAAGATGGGGGACTAAATCCGGAGGGAGAATATATTTTGTCAAATCCATATCATCTGCTTGGAGTTTTCTCATCTCAAGTATTCCAAGAATCTTCACGACAAAAGATGTGGAGAAGGAAACATTCTCCATTGCACGGAATGGAGAAACATTGCAATGTAGAAATAGCTGCACAGGTTTCACGCCTGTCATTGTCAAAACATGAAGGGGAGCGTGATTCTTTTCAGCTAGTAGGGTTAGTGGAGAGTCCGTCTGTGGACGATGATGGGGACTGCTTCTCGCCTTTACAGTTAAATGCAACTTCTATTAACATTGAAGTCTACTATAATAAAGCAGTGAACTATACCTTGATGGTTACTTTTATCTCATTTTTGCAAGTTCTTCTTTTAATTCGGCAAATGGAGCATAGCAACACCCAATCTGGGGCTGCTAAGGTTTCAATATTAACGATTGGTCAGCAAGCTATAGTAGATGCTTATCTTTGCCTTATACATTTGACTGCCGGAATACTAGTTGAATCCTTGTTTAATGCTTTTGCGACTGCTGCATTTTTCAAGTTTGTGGTGTTCTCAATATTTGAGATGAGATATCTCCTTGCCATCTGGAAAGCAAGTAGGCCTTTGAGCAACGGTGAAGGTTGGGAAGCAATGAGGCGTGAACTATCAGTTTTATACAGCCGATTCTATGGAATCCTACTGGGAGGCATACTGCTCATGTATGAATTCCACAATCATTTGAGACTTATTCTTCTTCTTGTATACTCCTTTTGGATACCTCAGATAATCACCAATGTTGTTCGTGACTCACGCAAGCCATTGCATCCTCATTATATATTAGGCATAACTATTACTCGGCTAGCAATCCCATTATATATTTTTGGTTGTCCTGACAACTTCTTGCGTATAGAACCAGATCAGAGCTGGTGTGTTTGTTTGGCTATATTTGTTGGACTTCAAGCTGCAATTCTCTTGCTTCAGCACTATTTTGGGTCTTTGTGGTTCATTCCTCGTCAGTTTCTACCTGAAAAATACTGCTATTATAGGAGGTTTACTCATGATACAAATCACTCCACAGACTGTGTTATATGCATGACAGCTATTGGTCTTTCTCCACGATCAAATGATTGCATGGTGACCCCTTGTGATCATTTCTTCCACTCTGGTTGTTTGCAAAGATGGATGGATATAAAGATGGAGTGCCCAACATGCCGACGCCCTCTTCCACCTGCCTGA 1728 0.4045 MVCLGFDMVEVDFQRLELERREVRILLRISCGWLVFLLFLSPVAGLRPLRDKTNSWGDEWVFTRKDESDLGPFSQWNITGTYRGTWKFLDTTNGSTRFPDIRKINGNSVIELVSVPTKITGVHYVQGVVIFHDVFDNEYNVGGAQIRVEGVYIWPYRQLRMVANSGKDGGLNPEGEYILSNPYHLLGVFSSQVFQESSRQKMWRRKHSPLHGMEKHCNVEIAAQVSRLSLSKHEGERDSFQLVGLVESPSVDDDGDCFSPLQLNATSINIEVYYNKAVNYTLMVTFISFLQVLLLIRQMEHSNTQSGAAKVSILTIGQQAIVDAYLCLIHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPLSNGEGWEAMRRELSVLYSRFYGILLGGILLMYEFHNHLRLILLLVYSFWIPQIITNVVRDSRKPLHPHYILGITITRLAIPLYIFGCPDNFLRIEPDQSWCVCLAIFVGLQAAILLLQHYFGSLWFIPRQFLPEKYCYYRRFTHDTNHSTDCVICMTAIGLSPRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPPA 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2169g00004 575 FunFam E3 ubiquitin-protein ligase, putative 511 575 - -
Vium2169g00004 575 CDD RING-H2_TUL1-like 519 574 - -
Vium2169g00004 575 PANTHER RING ZINC FINGER PROTEIN 131 574 - -
Vium2169g00004 575 ProSiteProfiles Zinc finger RING-type profile. 525 569 IPR001841 -
Vium2169g00004 575 Pfam Ring finger domain 524 569 IPR001841 -
Vium2169g00004 575 SUPERFAMILY RING/U-box 505 574 - -
Vium2169g00004 575 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 512 575 IPR013083 -
Vium2169g00004 575 SMART ringv_2 524 569 IPR011016 GO:0008270
Vium2169g00004 575 SMART ring_2 525 568 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2169g00004 Vium-Chr2169 72971 88049 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2169g00004 525 572 C3H Transcription Factor Family AT4G12190 39.583 1.09e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2169g00004 K23788 - gmx:100802452 1093.57