Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2169g00002 ATGTCACTGCAGGCTCTGAAGGAGACTCTGCAACCTTGTTCAACCCAAAAACCCTCTTCCTCTTCTGCAATTACCCAAACACAGCGCAATCCAATTCTTCGTGACTACGATTCCCTCTTCCCAATCCACAGAAAACCTCCAAAATCATCTCTTTCGGACCAGCTTCGCCGCCTTAACGACTCACTATCCCCATTACACTCCAAAACCCTACAACAAGAAGAAAAAAAAGAGGAACTACTAGAAGAAGAAGAAGAACCTGAGATAGAGAGACCCAAATTCGCTTCAGTTAAATTGCCACAGTTTCAATTTGATCACACTGGACCCTTTGAGCCTCTCCTCCTGTCTTCGCATGGAGAATTTCCGGTGGTTCAGGTTCCTGCATCTATAAACTGTAGACTGCTTGAGCATCAAAGAGAGGGTGTGAGGTTTTTGTATGGTTTGTACAAGAACAATCATGGAGGCATACTTGGAGATGACATGGGTCTTGGGAAGACAATTCAAGCAATAGCATTTCTTGCTGCTGTCTTTGGTAAAGAAAATTCTACCCTAAATGAAAACCAGCTAGAGAAAAGAGAACCTGCATTAATAATATGCCCAACATCTGTTATCCACAACTGGGAGAGTGAATTCTCTAAGTGGTCTAACTTCAGTGTTTCCATTTATCATGGTGCAAACCGGGATTTGATATTTGATAAATTGGAAGCAAATGGAGTAGAGATACTTATTACCAGTTTTGACACATACAGGATTCATGGAAGTTTGTTGTCAGATGTCAAATGGAATGTCATGATTGTCGATGAGGCTCATCGACTTAAGAATGAGAAATCAAAACTCTATAAAGCATGTTTACAAATTAAAACCCTTAGACGGTATGGTCTCACTGGGACTATAATGCAAAATAAGATAATGGAACTGTTCAATCTCTTCAACTGGGTTTCACCTGGATCCCTTGGAACACGGGAACACTTTCGTGACTTCTATGATGAACCCCTAAAGCATGGCCAGAGGTCAACTGCTCCTGATAGGTTTGTCCAAATTGCTAATAAGAGAAAACAACACCTCGTGGAAGTTCTTCATAAATATATGTTGAGAAGGACAAAGGAAGAGACCATTGGGCATCTTATGATGGGTAAGGAAGATAACATTGTATTTTGTGCAATGAGTGATGTGCAAAAACGTATTTACAGGAGAATGTTACAGCTTCCTGACATTCAATGCCTTATAAATAAGAACTTGCCATGTAGTTGTGGTAGCCCTCTCACTCAAGTTGAATGTTGCAAGAGGATAGTACCAGATGGAGTTATTTGGCCTTACTTGCATAGAGATAACCCAGATGGTTGTGATTCATGCCCCTTTTGCCTTGTCCTTCCGTGCCTTGTCAAGCTCCAACAGATAAGCAATCACCTTGAGCTCATCAAACCAAACCCCAAAGATGACCCTGAGAAACAAAGTAAAGATGCAGAGTTTGCTGCTGCTGTCTTTGGCCCTGATATCGATTTAGTGGGTGGGAAAACACAAAATGAAAGTTTCATGGGTCTAAGTGATGTGAAACATTGTGGCAAAATGCGAGCACTTGAGAAGCTATTGTTCTCATGGTTTTCACAGGGTGACAAAGTTCTTTTGTTTAGCTATTCTGTAAGGATGCTGGACATACTGGAGAAATTTCTTATTCGAAAAGGCTACTGTTTCTCAAGACTTGATGGGTCCACTCCGACTAATTTACGCCAATCCCTGGTTGATGATTTCAACTCAAGTCCAAGCAAACAAGTATTCCTGATATCAACTCGTGCTGGTGGGCTTGGATTGAACCTTGTCAGTGCAAACCGTGTTGTAATATTTGACCCTAACTGGAACCCTGCTCAAGACTTACAGGCTCAGGACAGGTCCTTTCGATTTGGACAGAAGCGGCATGTCGTGGTGTTCCGTCTTCTTGCAGCTGGTTCACTTGAAGAACTTGTTTATTCACGTCAGGTGTATAAGCAGCAGCTCTCGAACATTGCTGTCTCTGGAAAGATGGAAAAACGATATTTTGAAGGTGTCCAGGACTGCAAAGAATTTCAAGGAGAGCTATTTGGTATTTCCAATTTATTCCGAGATTTGTCAGATAAGCTGTTTACCAGTGAGATCATTGAATTGCATAAAGAACATGGATATGAATCGGAACAACTGGAAGAAGTAAATCTGTCAGAACAACGAGGTTCATCGGTATCAGAGTCAGAAACCAGATTATGTCATAAGTCTGCTGGGGCTGCAACAAGCAAACCAGATCTTGAAGGCCTTGGCATAGTATATACTCATCGCAATGAAGACATTGTCAACTTTGGACCTGGGATTCAAGGGAAAATAAATGCCAACCCATCAAATGATAGCTTAGTCAAGCCAAGCACCTCTTTGGACCATCAAAGAAAAAGACCAGAAAAAAGGAAAGTTCCTTTGATTGATGATAGGAAGAGAACCCAATATAAGCTCCTTGCTCAGTCTATGGGCATGGAAGAGCTTGCTTTTAGCAAATGGTTATTATCAGCGACTCCACTTGAGAGAGAAAAAGTGCTTCTTGACTACAAGAAGAAAAAGAAGATGCCTAATGGTTGA 2592 0.4144 MSLQALKETLQPCSTQKPSSSSAITQTQRNPILRDYDSLFPIHRKPPKSSLSDQLRRLNDSLSPLHSKTLQQEEKKEELLEEEEEPEIERPKFASVKLPQFQFDHTGPFEPLLLSSHGEFPVVQVPASINCRLLEHQREGVRFLYGLYKNNHGGILGDDMGLGKTIQAIAFLAAVFGKENSTLNENQLEKREPALIICPTSVIHNWESEFSKWSNFSVSIYHGANRDLIFDKLEANGVEILITSFDTYRIHGSLLSDVKWNVMIVDEAHRLKNEKSKLYKACLQIKTLRRYGLTGTIMQNKIMELFNLFNWVSPGSLGTREHFRDFYDEPLKHGQRSTAPDRFVQIANKRKQHLVEVLHKYMLRRTKEETIGHLMMGKEDNIVFCAMSDVQKRIYRRMLQLPDIQCLINKNLPCSCGSPLTQVECCKRIVPDGVIWPYLHRDNPDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPKDDPEKQSKDAEFAAAVFGPDIDLVGGKTQNESFMGLSDVKHCGKMRALEKLLFSWFSQGDKVLLFSYSVRMLDILEKFLIRKGYCFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVVVFRLLAAGSLEELVYSRQVYKQQLSNIAVSGKMEKRYFEGVQDCKEFQGELFGISNLFRDLSDKLFTSEIIELHKEHGYESEQLEEVNLSEQRGSSVSESETRLCHKSAGAATSKPDLEGLGIVYTHRNEDIVNFGPGIQGKINANPSNDSLVKPSTSLDHQRKRPEKRKVPLIDDRKRTQYKLLAQSMGMEELAFSKWLLSATPLEREKVLLDYKKKKKMPNG 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2169g00002 863 Coils Coil 65 85 - -
Vium2169g00002 863 Pfam Helicase conserved C-terminal domain 521 633 IPR001650 -
Vium2169g00002 863 SMART ultradead3 129 323 IPR014001 -
Vium2169g00002 863 MobiDBLite consensus disorder prediction 62 88 - -
Vium2169g00002 863 Gene3D - 113 364 IPR038718 -
Vium2169g00002 863 MobiDBLite consensus disorder prediction 783 809 - -
Vium2169g00002 863 CDD SF2_C_SNF 515 644 - -
Vium2169g00002 863 PANTHER SNF2/RAD54 FAMILY MEMBER 37 807 - -
Vium2169g00002 863 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 145 315 IPR014001 -
Vium2169g00002 863 Pfam SNF2-related domain 149 405 IPR000330 GO:0005524|GO:0140658
Vium2169g00002 863 Gene3D - 377 732 IPR027417 -
Vium2169g00002 863 SMART helicmild6 550 633 IPR001650 -
Vium2169g00002 863 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 524 677 IPR001650 -
Vium2169g00002 863 FunFam Switch 2 115 364 - -
Vium2169g00002 863 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 365 IPR027417 -
Vium2169g00002 863 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 369 688 IPR027417 -
Vium2169g00002 863 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2169g00002 Vium-Chr2169 37059 43363 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2169g00002 153 663 RAD5 or RAD16-like Gene Family AT1G02670 27.338 1.04e-34 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vium2169g00002 SNF2_N 1.7e-55 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2169g00002 K20098 - gmx:100781003 1523.45