Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2164g00002 ATGAAGGGATGGGATGGGATTCAATCTTCTTTATCTTCTCGATCGAGTTCCACGTTGGGCCATCAAGCTTCCTCTCGGTTGGGCCACCAACCTTCCTCTCGATCTGTTCGACTCGGCCGAGTTCAGCCTCAGGCTCCGACTCACCGGACCATCTTCTGCAACGATCGCGAGGCCAATTTTCCTATTCGATTCAAGGGGAATTCTATATCAACTACCAAATATAACTTCTTCACCTTTTTGCCAAAAGGACTATTTGAGCAGTTCAGACGAGTGGCTAATCTCTACTTTCTTACAATCTCAATTTTGTCAACCACACCTATTAGTCCGGTGTCTCCAATAACAAATGTGCTTCCTCTGTCTCTGGTGCTTCTTGTCTCTCTTATCAAGGAAGCTTTTGAAGATTGGAAGCGTTTTCAAAATGACATGTCCATAAATAACAATGGTATAGACGTTTTGCAAGATCAAAAGTGGCAGTCTATATCCTGGAAGAAGTTGCAGGTTGGAGACATTGTGAAGGTTAAACAGGATGGATTCTTTCCTGCAGATCTGCTTTTCTTGGCAAGCACCAACGCAGATGGTGTCTGCTACATTGAGACTGCTAACTTGGATGGGGAAACCAATTTGAAGATTAGGAAAGCATTGGAAAAGACTTGGGATTATGTGACTCCAGAGAAGGCATCTGAGTTTAAAGGTGAAATTCAATGTGAACAACCAAACAATTCATTGTATACCTTTACTGGAAATCTTATAACCCAAAAGCAAACATTGCCTCTCAGTCCAAATCAAATTTTATTGCGGGGTTGCAGTCTCAGGAATACAGAGTATATTGTTGGGGTTGTTATATTTACTGGACATGAAACAAAGGTGATGATGAATACAATGAATGTTCCTTCCAAAAGAAGTACATTGGAGAGAAAGCTTGACAAGCTCATACTAACTTTATTTGCAACTCTCTTCATGATGTGTTTCATTGGAGCCATAGGCAGTGCTATCTTCGTAAATAAAAAATATTTTTACTTACATCTTGATTCATCAGAAGAGGGCTCGGCACAGTTCAACCCCAGAAATAGATTCTTGGTTTTTATTCTGACAATGTTTACCCTAATAACACTATACTCAACAATCATTCCCATTTCACTTTATGTGTCCATAGAGATGATAAAATTTATTCAATCAACTCAATTTATCAACAAAGACTTGTCCATGTACCATGCTGAAACAAATACACCTGCATTAGCCAGAACTTCAAATTTGAATGAAGAACTTGGGCAGGTGGAATACATTTTCTCTGATAAAACTGGAACTCTAACAAGAAATTTAATGGAGTTCTTCAAGTGTTCGATTGGAGGAGAGGTCTATGGCAATGGTGTGACTGAAATTGAGAGAGGATTAGCAGAGCGCAATGGAATGAAGATTGAGGAAAATATTTCTTCCAAAGCAGTGCAAGAGAGAGGTTTTAATTTTGATGATGATAGGCTTATGAGGGGAGCTTGGAGGAATGAGCCTAATCCTGACGTTTGCAAGGAATTCTTCAGATGCCTTGCTATATGCCATACTGTGCTGCCAGAGGGTGATGAATCCCCTGAAAAGATCAGATATCAAGCTGCATCACCTGATGAGGCTGCTTTGGTTATTGCTGCAAAACACTTTGGTTTCTTTTTCTACAGACGCACACCTACAATGATATATGTTCGTGAATCTCATGTTGAGAAAATGGGCAAAATTCAAGACGTGTCTTATGAGATTTTAAACGTGCTTGAGTTTAATAGTACAAGGAAGCGTCAGTCTGTTGTATGCCGTTATCCTGATGGAAGGCTTGTCCTATACTGTAAGGGTGCTGATACTGTAATCTATGAGAGACTGGCTAATATTAGTAATAGTATCAAGAAAGTCACCAGGGAGCATTTGGAACAATTTGGATCTGCCGGACTTCGCACATTATGCTTAGCCTACAAAGAATTACATCCTGATGTTTATGAAAGCTGGAATGAGAAGTTTATCCAGGCCAAGTCTTCTCTAAATGATCGTGAAAAGAAATTGGATGAGGTGGCAGAACTTATCGAAAATGATCTCATTTTAATTGGTAGCACAGCCATAGAAGACAAGCTTCAAGAGGGTGTACCTGCTTGCATAGAGACTCTTCAAAGAGCTGGTATTAAAATTTGGGTTCTTACAGGGGACAAGATTGAAACAGCTATAAACATAGCCTATGCATGCAACTTGATAAACAATGAGATGAAGCAATTTGTGATTAGTTCAGAAACTGATGCAATCAGAGAAGTTGAAGACAGGGGTGACCAAGTGGAGATTGCACGGTTTATCAAAGAAGAAGTGAAAAAAGAGCTGAAGAAATGCCTTGAGGAAGCACAGAACTATTTTCACTCCCTATCTGGACCAAAATTAGCTCTTGTAATTGATGGAAAATGTCTAATGTATGCATTGGATCCAAGTTTAAGAGTGATGCTGCTCAACATTAGTTTGAATTGTCATTCTGTTGTTTGCTGTCGAGTTTCTCCTTTACAAAAAGCACAGGTCACAAGTATGGTTAAGAAAGGTGCTCACAAAATAACACTTAGTATTGGTGATGGAGCCAATGATGTTAGCATGATTCAAGCTGCTCATGTTGGTGTTGGCATAAGTGGGTTGGAGGGAATGCAAGCTGTGATGGCCAGCGATTTTGCCATTGCACAGTTTCGTTACCTTGCTGACTTGCTTCTTGTTCATGGCAGATGGTCTTATTTGCGAGTTTGCAAGGTTGTCTTATACTTCTTTTACAAGAATCTCACTTTCACTCTTACTCAGTTCTGGTTTACGTTTCAAACTGGATTTTCTGGTCAGAGATTCTATGATGATTGGTTTCAGTCACTATATAATGTTATCTTCACAGCGCTACCTGTAATCATTGTTGGATTATTTGACAAGGATGTCAGTTCATCTCTATCCAAGAAGTATCCTGAACTATACATGGAAGGAATAAGAAATGTTTTCTTTAAATGGAAAGTTGTGGCAATATGGGCATTCTTTTCTATTTACCAATCTCTAATATTCTTCTATTTTGTGAGTACAACAAATTTAAGTGCTAAAAACTCAGCAGGCAAGATCTTTGGATTATGGGATGTCAGTACAATGGCCTTCACTTGTGTTGTAATAACCGTCAACTTGCGACTGCTTATGATTTGTAATTCCATCACTAGATGGCACTATATTAGTGTTGGTGGAAGTATATTAGCCTGGTTTATTTTTATTTTTATATATTCAGGGATTAGCACTCCTTATGATCGTCAGGAAAATATTTATTTCGTCATTTATGTCATAATGACTACGTTTTACTTCTACGTCATGCTACTTCTAGTTCCTGTTGCTGCACTTTTCTGTGACTTTGTTTACCAAGGGGTTCAAAGATGGTTCTCCCCCTATGATTATCAGATTATTCAAGAAATGCATAGAGATGAGCTAGATAACACTGGTAGGGCGCAGTTGTTGGAGATAGGGAACCAGCTCACACCAGCTGAGGCAAGGAGTTATGCAATATCTCAACTCCCACGTGAGATATCAAAGCACACCGGGTTCGCCTTTGATTCACCTGGGTATGAATCCTTTTTTGCCGCACAGCTTGGTGTATATGCCCCACCCAAGGCATGGGATGTTGCTAGACGAGCCAGTATGAGAACCAAGCCCAAGATTGGCCAGCAGAAGTAA 3699 0.3969 MKGWDGIQSSLSSRSSSTLGHQASSRLGHQPSSRSVRLGRVQPQAPTHRTIFCNDREANFPIRFKGNSISTTKYNFFTFLPKGLFEQFRRVANLYFLTISILSTTPISPVSPITNVLPLSLVLLVSLIKEAFEDWKRFQNDMSINNNGIDVLQDQKWQSISWKKLQVGDIVKVKQDGFFPADLLFLASTNADGVCYIETANLDGETNLKIRKALEKTWDYVTPEKASEFKGEIQCEQPNNSLYTFTGNLITQKQTLPLSPNQILLRGCSLRNTEYIVGVVIFTGHETKVMMNTMNVPSKRSTLERKLDKLILTLFATLFMMCFIGAIGSAIFVNKKYFYLHLDSSEEGSAQFNPRNRFLVFILTMFTLITLYSTIIPISLYVSIEMIKFIQSTQFINKDLSMYHAETNTPALARTSNLNEELGQVEYIFSDKTGTLTRNLMEFFKCSIGGEVYGNGVTEIERGLAERNGMKIEENISSKAVQERGFNFDDDRLMRGAWRNEPNPDVCKEFFRCLAICHTVLPEGDESPEKIRYQAASPDEAALVIAAKHFGFFFYRRTPTMIYVRESHVEKMGKIQDVSYEILNVLEFNSTRKRQSVVCRYPDGRLVLYCKGADTVIYERLANISNSIKKVTREHLEQFGSAGLRTLCLAYKELHPDVYESWNEKFIQAKSSLNDREKKLDEVAELIENDLILIGSTAIEDKLQEGVPACIETLQRAGIKIWVLTGDKIETAINIAYACNLINNEMKQFVISSETDAIREVEDRGDQVEIARFIKEEVKKELKKCLEEAQNYFHSLSGPKLALVIDGKCLMYALDPSLRVMLLNISLNCHSVVCCRVSPLQKAQVTSMVKKGAHKITLSIGDGANDVSMIQAAHVGVGISGLEGMQAVMASDFAIAQFRYLADLLLVHGRWSYLRVCKVVLYFFYKNLTFTLTQFWFTFQTGFSGQRFYDDWFQSLYNVIFTALPVIIVGLFDKDVSSSLSKKYPELYMEGIRNVFFKWKVVAIWAFFSIYQSLIFFYFVSTTNLSAKNSAGKIFGLWDVSTMAFTCVVITVNLRLLMICNSITRWHYISVGGSILAWFIFIFIYSGISTPYDRQENIYFVIYVIMTTFYFYVMLLLVPVAALFCDFVYQGVQRWFSPYDYQIIQEMHRDELDNTGRAQLLEIGNQLTPAEARSYAISQLPREISKHTGFAFDSPGYESFFAAQLGVYAPPKAWDVARRASMRTKPKIGQQK 1232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2164g00002 1232 FunFam Phospholipid-transporting ATPase IC 426 438 - -
Vium2164g00002 1232 NCBIfam HAD-IC family P-type ATPase 832 939 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium2164g00002 1232 PRINTS P-type cation-transporting ATPase superfamily signature 860 879 - -
Vium2164g00002 1232 PRINTS P-type cation-transporting ATPase superfamily signature 429 443 - -
Vium2164g00002 1232 SUPERFAMILY HAD-like 417 902 IPR036412 -
Vium2164g00002 1232 Pfam Cation transport ATPase (P-type) 526 622 - -
Vium2164g00002 1232 Gene3D - 559 692 IPR023299 GO:0000166
Vium2164g00002 1232 SFLD p-type atpase 411 911 IPR044492 -
Vium2164g00002 1232 MobiDBLite consensus disorder prediction 1 43 - -
Vium2164g00002 1232 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 40 1187 - -
Vium2164g00002 1232 Pfam Phospholipid-translocating P-type ATPase C-terminal 888 1138 IPR032630 -
Vium2164g00002 1232 CDD P-type_ATPase_APLT_Dnf-like 66 1020 - -
Vium2164g00002 1232 Pfam Phospholipid-translocating ATPase N-terminal 51 115 IPR032631 -
Vium2164g00002 1232 ProSitePatterns E1-E2 ATPases phosphorylation site. 431 437 IPR018303 -
Vium2164g00002 1232 SUPERFAMILY Calcium ATPase, transduction domain A 149 290 IPR008250 -
Vium2164g00002 1232 SFLD C1.7: P-type atpase like 411 911 - -
Vium2164g00002 1232 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 435 707 IPR023299 GO:0000166
Vium2164g00002 1232 Gene3D - 129 294 - -
Vium2164g00002 1232 Gene3D - 693 900 IPR023214 -
Vium2164g00002 1232 FunFam Phospholipid-transporting ATPase 537 692 - -
Vium2164g00002 1232 Pfam E1-E2 ATPase 149 385 - -
Vium2164g00002 1232 FunFam Phospholipid-transporting ATPase 125 294 - -
Vium2164g00002 1232 FunFam Phospholipid-transporting ATPase 693 900 - -
Vium2164g00002 1232 NCBIfam phospholipid-translocating P-type ATPase 64 1146 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Vium2164g00002 1232 MobiDBLite consensus disorder prediction 1 40 - -
Vium2164g00002 1232 SUPERFAMILY Calcium ATPase, transmembrane domain M 63 1137 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2164g00002 Vium-Chr2164 51912 91202 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2164g00002 24 1231 Primary Pumps ATPases AT1G59820 79.239 0.0 2063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2164g00002 K14802 - gmx:100815547 2321.58