Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2164g00001 ATGTCACCGGAAAGAGACGTCATATTGGCGACGCCGGGAGCGTTCCGGCTGCGGTGGGACGTGTTCCTGAGCTTCAGAGGCACCGACACGCGCGGCACTATCACGAAAGGTCTGTACAAGAGTCTGCAGACGCGTGGGGTTCGCGTGTTCCTGGACGACGAGGGGTTGGAGCGTGGGGAAGCGGTAGCGAATGGGCTGATGAAGGGAATTGATGACTCTGCAGCGTTCATCGTCATCTTATCTGAAAACTACGCTTCTTCACACTGGTGTCTTGAGGAACTCACCAAGATTTGCGACACCGGTAGACTCCTCTTGCCCGTTTTCTACCGGGTTGACCCGTCGCAGGTCCGACACGTATCGGGTCCCTTCGGATCGGGTTTCGAATCGCATGAAAAAAGGTTTGAGAAAAATACGGTTTCAAAATGGAAGGAAGCGTTGAAGAAAGTTGGTGGAATTGCTGGTTGGGTTTTTAATCACAGTGAGGAAAATGATCTGATTCAGCGTTTGGTACGAAGGGTGTTGAAAGAGTTGAGTAACACTCCTATGGGCGTGCCTGAGTTTGCAGTGGGGCTTGACGAACGTGTTGAGAAGGTGATGGAAGTTTTGCAAGTTCAATCCAATGGTGTCAAGGTTTTGGGGTTGTATGGGATGGGTGGGGTTGGTAAGACAACCCTGGCCAAGGCCCTTTTCAATGCCCTTGTTAACCGTTTTGAGCACCGTTGCTTCATTTCCGACGTGAGACAAGTTTCATCAAAACACGATGGTTTGGTTTCCCTTCAAAGCAAAATCATTAAAGACCTTTTTCCTGGAGCAGGGTCTCCCTCCATCGGTGATGTCAATGTTGGTATTTCTGCTATCAAAGGTCGAGTTAGTGAGAATCGAGTTTTACTAGTCTTGGATGATGTCGATGAAGTGAAGCAGCTTGATGCTTTGATTGGTAAGAGGGAATGGTTTTACGATGGAAGCTGTGTGATAATCACAACACGGGATACAGAAGTTCTAACTCAGAATCATGTAACTGTGTCGTATGAAGTTAGAGAGTTGTATGCTTCTGAAGCTCGAGAGTTATTCAGTTATCATGCACTGAGAAGAAGTGCACCACCAGAAAATCTTCTGAGTTTATCAGAGGAGATAATATCCCTGACGGGAAAAATGCCTTTGGCTCTGGAAGTGTTTGGTTCGTTTTTGTTTGGTAAGAGGAGGGAGGAGGAATGGGAGGATGCTGTGAAGAAGCTAAGGCTAATTCGCCCTCACCATCTTCAGGATGTGTTGAAGATAAGTTACGATTGTTTAGATGAAGAAGAGAAGTGTATATTCCTTGATATTGCTTGTTTGTTTGTACAAAAGAAAATGAAGCGTGATGGTGTGATTGATGTGTTAAGAGGTTGTGGTTTCAGGGGTGAGATTGCTATCACAGTACTAGTGCAGAAGTGCTTGATGAAAATCACTCCGGATAATACTGTGTGGATGCATGATCAAATTAGAGACATGGGAAGGCAAATTGTTATGGATGAAAGCTTTGTGGATCCTGGTTCGCGTAGTAGACTGTGGGATCGAGCTCAAATCATGACTGTGTTGAAGGGTCACAAGGGAACTAGATGCGTTCAAGGTATTGTACTTGATTTTGAGGAAGAAAGGTTTTATAAGGGAAAGTTCGGATCAGTTTTTCCGAAGAAGTTTCAATGGAGACCAAGTTTAAGAAATATATCATGTTACATCAAACAATGCCTTAAGAATCATCCTGAACCTCAAGCAGAGGAAAACACAGAGTTTGTACTTCACACGAAATCCTTTGAACCAATGGTTAATCTGAGACAACTTCAGATCAACAATCTGAAATTACAGGGCAAGTTTCTTCCATCTGAACTGAAGTGGTTACAATGGCAAGGGTGCCCTTTAGAACGCATGCCTTTGAAATCTTGGCCAGGAGAGCTGGCTGTCCTTGATCTCAAAAACAGCAAGAAAATGGAAACTTTGTGGGGATGGAATGGTCACAACAAGGTGCCACAGAAGTTAATGGTCTTGAACCTCTCCAACTGCATCCAACTCACTGCTATACCTGACTTATCTGGGTGTCAATGTCTAGAGAAGATTGATTTGGAGAACTGCATTAATCTAACTAAGATTCATGAATCAATTGGCTGTTTGAGTACCTTGCGTAGTTTAAATTTAACGCGTTGTTCAAGCCTTATCAACCTTCCCATTGATGTCTCGGGGCTAAAACAACTGGAGAGTCTTTTTCTTTCTGGCTGCTCCAAGTTAAAATCGTTGCCAGAAAATATTGGAATCCTGAAATCCTTGAAAGCACTTCATGCTAATGACACTGCAATAGCAGAGTTGCCCCAGTCCATTTTTCGCCTCACGAAGCTTGAGCAGCTTGTTTTAGAACGTTGCCAATATTTGAGAAGGCTACCTAATTCTCTAGGACACCTGTGTTCTTTGCAAGTATTATCTCTATATCACTCTGGGTTGGAAGAATTACCTGAGTCTGTGGGATCGTTAAATAACCTGGAGACACTCAATTTGATGGGGTGTGAATCTCTCACTGTTATTCCTGATTCTGTAGGGAATCTCATGTCATTGACAGAACTTCTGGTTGATAGAACTGCAATTAAGGAACTCCCTACAACTGTTGGTTCTTTATCTTACCTGAGGGAATTATCAGTTGGAAACTGTAAACTTCTCACCCAATTGCCAAATTCAGTTAAAACGTTGGCCTCAGTTGTGGAACTTCAGTTAGATGGAACAGCCATCACAAATTTGCCAGATGAGATTGGAGAGATGAAGCTACTGAGGGTACTTAAGTTGATGAATTGTAAAAATCTTGAATACTTACCGGAATCTATTGGCCACCTAGCATCTCTTACTACATTGAACACGGTCAATGGTAATATCAAAGAATTGCCAGAATCCATTGGGCAGCTGGAAAATCTTGTCAACTTAAGATTGAACAAATGCAGAATGCTCAGAAAGCTTCCAGCTTCTATAGGAGATTTGAAATCTCTGTATCACATTTTCATGGAGGAAACAACTGTGTCAAGCTTACCTGAAAGCTTTGGGATGCTGTCAAGCTTGAGAACATTGAAAATGGCAAAGAGGCCTGAATTAGATACCAATGAAAGTAGCTTCCTTGCAGAACCTGAAGAGAACCATAGCCCTTTTGTACTAACATCTTCCTTCTGCAATCTGACCTTGCTAACTGAGCTTGATGCCCGTGCATGGAAAATATCTGGGAAAATTCCTGATGAATTTGAGAAGTTGTCACTATTGGAGACTTTGAAATTAGACAGGAATGATTTTCACAGCCTGCCTTCCAGTTTGAAGGGCCTTTCTATCCTCAAGGTCCTTTCACTGTCAAACTGCACTCAGCTGAGCTCTCTCCCCTCACTTCCTTCAAACCTGATTAAGCTGAATGTTCAAAACTGTTCTTCATTAGAAACTATCCATGACATGTCAAATTTAGAGAGCCTGCAGGAGTTGAATCTCACAAACTGTGTAAAAGTGGGGGATATTCCGGGTCTTGAAAGCTTGAAGTCCTTGAGAAGGTTGTACATGAGTGGTTGCATTGCATGCTCCTCACAAATACAAAAGAGACTTTCGAAGGTTGCACTGAGGAATTTACAGAACTTAAGCATGCCTGGAAGCAAATTACCTGAATGGTTTTCTGGGCAAACTGTGAGCTTTTCCAAGCGTAAAAATCTTGAGCTAAAGAGTGTACTTGTTGGTGTTATTATTTCAATCAACCACAGCATTGACATACCCAACATGAAGAGAGATGATATGCCAGGCTTGATTGATGTTGAAGCAAATGTTCTCAAAGGGGGAAGAACTCTGTTTAAGACTGTGTTAAACATCTGTGGGGTGCCTCGAACAGATGAAGAACACATGCACTTGTGTAGGTTCCATGATTACCATCAGCTGGTAGCCTTTCTAAAAGATGCTGATAAATTTTCTGTGAGCAAGAGAAATCCACCTTTTGATACGGGGTTGGAGTTAAGAAAATGTGGGGTCTATTTAATCTTTGAAGGAGATGATGATTATGATGGAGGGGAAGAATCATTGGACACAGGCCTACAATCTGTCTCAGAAAAATTGGCCAATTTTTTCAGCACTCGTGAAGGTGGTGATCAGGTGAGTGTCAATGGAATTGGACATGCTGGAACATGA 4167 0.4284 MSPERDVILATPGAFRLRWDVFLSFRGTDTRGTITKGLYKSLQTRGVRVFLDDEGLERGEAVANGLMKGIDDSAAFIVILSENYASSHWCLEELTKICDTGRLLLPVFYRVDPSQVRHVSGPFGSGFESHEKRFEKNTVSKWKEALKKVGGIAGWVFNHSEENDLIQRLVRRVLKELSNTPMGVPEFAVGLDERVEKVMEVLQVQSNGVKVLGLYGMGGVGKTTLAKALFNALVNRFEHRCFISDVRQVSSKHDGLVSLQSKIIKDLFPGAGSPSIGDVNVGISAIKGRVSENRVLLVLDDVDEVKQLDALIGKREWFYDGSCVIITTRDTEVLTQNHVTVSYEVRELYASEARELFSYHALRRSAPPENLLSLSEEIISLTGKMPLALEVFGSFLFGKRREEEWEDAVKKLRLIRPHHLQDVLKISYDCLDEEEKCIFLDIACLFVQKKMKRDGVIDVLRGCGFRGEIAITVLVQKCLMKITPDNTVWMHDQIRDMGRQIVMDESFVDPGSRSRLWDRAQIMTVLKGHKGTRCVQGIVLDFEEERFYKGKFGSVFPKKFQWRPSLRNISCYIKQCLKNHPEPQAEENTEFVLHTKSFEPMVNLRQLQINNLKLQGKFLPSELKWLQWQGCPLERMPLKSWPGELAVLDLKNSKKMETLWGWNGHNKVPQKLMVLNLSNCIQLTAIPDLSGCQCLEKIDLENCINLTKIHESIGCLSTLRSLNLTRCSSLINLPIDVSGLKQLESLFLSGCSKLKSLPENIGILKSLKALHANDTAIAELPQSIFRLTKLEQLVLERCQYLRRLPNSLGHLCSLQVLSLYHSGLEELPESVGSLNNLETLNLMGCESLTVIPDSVGNLMSLTELLVDRTAIKELPTTVGSLSYLRELSVGNCKLLTQLPNSVKTLASVVELQLDGTAITNLPDEIGEMKLLRVLKLMNCKNLEYLPESIGHLASLTTLNTVNGNIKELPESIGQLENLVNLRLNKCRMLRKLPASIGDLKSLYHIFMEETTVSSLPESFGMLSSLRTLKMAKRPELDTNESSFLAEPEENHSPFVLTSSFCNLTLLTELDARAWKISGKIPDEFEKLSLLETLKLDRNDFHSLPSSLKGLSILKVLSLSNCTQLSSLPSLPSNLIKLNVQNCSSLETIHDMSNLESLQELNLTNCVKVGDIPGLESLKSLRRLYMSGCIACSSQIQKRLSKVALRNLQNLSMPGSKLPEWFSGQTVSFSKRKNLELKSVLVGVIISINHSIDIPNMKRDDMPGLIDVEANVLKGGRTLFKTVLNICGVPRTDEEHMHLCRFHDYHQLVAFLKDADKFSVSKRNPPFDTGLELRKCGVYLIFEGDDDYDGGEESLDTGLQSVSEKLANFFSTREGGDQVSVNGIGHAGT 1388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2164g00001 1388 Gene3D Ribonuclease Inhibitor 768 960 IPR032675 -
Vium2164g00001 1388 Gene3D Ribonuclease Inhibitor 961 1176 IPR032675 -
Vium2164g00001 1388 Gene3D Ribonuclease Inhibitor 587 767 IPR032675 -
Vium2164g00001 1388 SUPERFAMILY L domain-like 896 1222 - -
Vium2164g00001 1388 PRINTS Disease resistance protein signature 211 226 - -
Vium2164g00001 1388 PRINTS Disease resistance protein signature 832 848 - -
Vium2164g00001 1388 PRINTS Disease resistance protein signature 289 303 - -
Vium2164g00001 1388 PRINTS Disease resistance protein signature 382 396 - -
Vium2164g00001 1388 ProSiteProfiles TIR domain profile. 17 177 IPR000157 GO:0007165
Vium2164g00001 1388 Pfam TIR domain 19 181 IPR000157 GO:0007165
Vium2164g00001 1388 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 442 IPR027417 -
Vium2164g00001 1388 Gene3D - 348 432 IPR042197 -
Vium2164g00001 1388 SMART LRR_typ_2 740 762 IPR003591 -
Vium2164g00001 1388 SMART LRR_typ_2 952 975 IPR003591 -
Vium2164g00001 1388 SMART LRR_typ_2 905 928 IPR003591 -
Vium2164g00001 1388 SMART LRR_typ_2 858 881 IPR003591 -
Vium2164g00001 1388 SMART LRR_typ_2 811 834 IPR003591 -
Vium2164g00001 1388 SMART LRR_typ_2 764 787 IPR003591 -
Vium2164g00001 1388 SMART LRR_typ_2 1087 1109 IPR003591 -
Vium2164g00001 1388 Gene3D - 175 343 IPR027417 -
Vium2164g00001 1388 FunFam Disease resistance protein (TIR-NBS-LRR class) 16 179 - -
Vium2164g00001 1388 SUPERFAMILY L domain-like 489 915 - -
Vium2164g00001 1388 SMART LRR_CC_2 881 908 IPR006553 -
Vium2164g00001 1388 SMART LRR_CC_2 692 719 IPR006553 -
Vium2164g00001 1388 SMART LRR_CC_2 1154 1183 IPR006553 -
Vium2164g00001 1388 SMART LRR_CC_2 834 861 IPR006553 -
Vium2164g00001 1388 SMART till_3 18 152 IPR000157 GO:0007165
Vium2164g00001 1388 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 155 IPR035897 -
Vium2164g00001 1388 Gene3D - 16 174 IPR035897 -
Vium2164g00001 1388 Pfam NB-ARC domain 193 413 IPR002182 GO:0043531
Vium2164g00001 1388 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 807 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2164g00001 Vium-Chr2164 24020 30434 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2164g00001 76 887 WRKY Transcription Factor Family AT4G12020 31.553 2.50e-87 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2164g00001 - - gmx:100786934 2132.84