Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2163g00001 ATGTCGTCGACGGTGCTGGAAGTGACGCGGGCGGCACACGAGGAGGTTGAACGGTTGGAGCGGCTGATAGTGAAGGAGCTCCAGAATGAGCCCGGTACCAACAAGGAGCGTTTGTATCAGAGTCACCGTGTGCGGAACATGATCGATACCATTACCTCCACCACTGAAAAGCTTATTGGAATATATGAAGATAACGACAATGCGAGGAAGGACGAGATTGCTGCACTCGGAGGCCAAACCGCCTCTGGAATTAACGTTTTCAGCGCCTTTTATGATAGACTCAAGGAGATACGAGAGTATCATAGGAAGCACCCAGTTGCACGTGTTGTTGACGCCATGATGATTATGAAGGTTCTCAAAGAAGAACCTCAAATTGAGTTTAGTGGAGAGGAAGCTCTTGGTCGATACTTAGACCTGCATGAATTATATTATCAGTATGTCAATTCTAAGTTTGGAGAGCCACTTGAGTATTCTGCATATCTTGATGTTTTCTCAGACACAAATAAGATTCCCCGCAAAATGAAAGTGACCAGACAGTACCGAGAATATAGTAATCTTTTGGAGTATCTATATAATTTTTCCAGCGA 587 0.4463 MSSTVLEVTRAAHEEVERLERLIVKELQNEPGTNKERLYQSHRVRNMIDTITSTTEKLIGIYEDNDNARKDEIAALGGQTASGINVFSAFYDRLKEIREYHRKHPVARVVDAMMIMNXVLKEEPQIEFSGEEALGRYLDLHELYYQYVNSKFGEPLEYSAYLDVFSDTNKIPRKMKVTRQYREYMXNLLEYLYNFSS 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2163g00001 197 PANTHER SPLICING FACTOR SF3A-RELATED 3 195 - -
Vium2163g00001 197 Pfam Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 127 176 IPR031774 -
Vium2163g00001 197 Pfam Splicing factor SF3a60 binding domain 80 105 IPR021966 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2163g00001 Vium-Chr2163 13695 15313 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2163g00001 1 195 C2H2 Transcription Factor Family AT5G06160 67.692 4.62e-89 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2163g00001 K12827 - vum:124829357 387.882