Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2161g00002 ATGGATGAAATGGAGGTTCCTGCTCTTTTCCTCTGTCCAGTTTCATTGCAGCTTATGAGAGACCCCGTGACAGTGTACACAGGAATCACATATGACAGACAAAACATAGAGAGATGGTTATTTTCATGCAAGAACAACAAAACCTGCCCTGTCACTAGGCAATCACTGTCACGCACAGATCTTACTCCAAACCACACTCTCCGACGTTTGATCCAAGCTTGGTGCGACCACAATGCCTGCCTTGGACATGAAACCTTTTCATCTCCAAACCCAACCATTGATCAAACCGAGATTGTCAAACTTCTCTTAGAGGCAAAGAAGTTCCCAGAAAAACAGCTCAAGTGTCTTAGTAGGCTTCAATATATTGCTCTTGAAAGTGAAAGTAACAAAATCTGTTTGGAGTCTGCAGGGGCAATAGATTTCTTGGCTTCCACCATGATGATAAATTCAACCGGTATGAGTGAAGCAGCTATAAAAATCATGTTTCACCTAAACCCTTCTGAATCTCAGCTTAAAAAACTGATGAACAACGAAGGGATTCAGTTTTTGGAGTCTTTGCTTCATGTCTTGAAGCTTGGAAAGTGCCAATCTCGAAGTCATACAACTTTGCTATTGAAGTCAACACTTAAGGTGGCTAGTCCAACCCAATTGAACAATGTCACCCCAGAGCTGTTTGTGGAGATAATTAGAGTGTTGAGGGATCAGATTTCACGAGAGGCTTCAAAGGCAGCTTTGAAACTTCTGGTGGAGTTGTGTTCATGGGGCAGGAACAAGATCAAAGCAGTTGAGAGTGGTGGAGTTTTAGTCATCGTTGAGCTACTTGTTGACGTGTCTGATAGGAGAGCATGTGAACTCATGTTGATAGCTTTGGACAAACTATGCGGTTGTGCAGAAGGAAGGGCTGAATTGGTGAACCATGGAGCTGGAATTGCTGTTGTGGCAAAGAAAATTCTGAGGGTTTCACAAGTGGCAAGTGATAGAGGGGTGAAAATTTTGACCTCCATTTGTAGGTATTCAGCCACCCCAAGAGTTCTTCATGAAATGCTGCTGTTTGGAGCAGTGTCAAAGTTGTGCTTGGTGCTTCAAGTTGAGGGTTGTTTCAAGGCCAAAGAAAGGGCAAAGGAGACACTCAAATTGCACTCTCTAGTCTGGAGGAACTCCACATGCATTCCTCTTCCTTTGCTTGCATCTTATCCATGA 1200 0.4342 MDEMEVPALFLCPVSLQLMRDPVTVYTGITYDRQNIERWLFSCKNNKTCPVTRQSLSRTDLTPNHTLRRLIQAWCDHNACLGHETFSSPNPTIDQTEIVKLLLEAKKFPEKQLKCLSRLQYIALESESNKICLESAGAIDFLASTMMINSTGMSEAAIKIMFHLNPSESQLKKLMNNEGIQFLESLLHVLKLGKCQSRSHTTLLLKSTLKVASPTQLNNVTPELFVEIIRVLRDQISREASKAALKLLVELCSWGRNKIKAVESGGVLVIVELLVDVSDRRACELMLIALDKLCGCAEGRAELVNHGAGIAVVAKKILRVSQVASDRGVKILTSICRYSATPRVLHEMLLFGAVSKLCLVLQVEGCFKAKERAKETLKLHSLVWRNSTCIPLPLLASYP 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2161g00002 399 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Vium2161g00002 399 SUPERFAMILY ARM repeat 108 361 IPR016024 -
Vium2161g00002 399 CDD RING-Ubox_PUB 7 61 IPR045210 -
Vium2161g00002 399 PANTHER WDSAM1 PROTEIN 3 391 IPR045185 GO:0061630
Vium2161g00002 399 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Vium2161g00002 399 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Vium2161g00002 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 84 IPR013083 -
Vium2161g00002 399 SUPERFAMILY RING/U-box 3 79 - -
Vium2161g00002 399 Gene3D - 85 385 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2161g00002 Vium-Chr2161 3124 4587 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2161g00002 2 399 U-box Gene Family AT2G35930 50.743 7.30e-142 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2161g00002 - - gmx:100778012 553.903