Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2160g00008 ATGGTTGGATTCCAGAGTGACCATAAGCCCGGGAACAAGTACAATGGTAATTCTAATATTATTCCGGATCGTGTTGAACGTCTTATGAGACGAAGAGAGCTTTTTAAAAGCAGCAAGGCATCTCTTTTGAATGAGGCTCCTGATAGTAATAATAATAATAATAATGTGATTACTGAATATTTTGAGCATGACCCGCGCTTAAGGGAAGATAATAACTCTGCTGCTTCCTATGAACGATTACTGGAAGGAGTGGCAGCGGCAGTGCGGGGCGAGAGGGAGGATGGGAAACCTTTCAAACAAAGGCTTTTGGTAGTGGCCAATAGGCTGCCAGTCTCGGCAATTAGGAAAGGCGAGGATTCGTGGTCCTTGGAGATAAGTGCTGGTGGCCTGGTGAGCGCTCTGTTAGGTGTGAAGGCTTTGGAGGCAAGGTGGATAGGTTGGGCTGGAGTCAATGTGCCAGATGAGATTGGACAAAAAGCACTTACTAAAGCTTTGGCTGAAAAGAGGTGTATCCCAGTATTTCTTGATGAAGAGATTGTTCATCAATATTATAATGGCTATTGTAACAATATTCTCTGGCCCCTTTTTCATTACCTTGGACTTCCACAAGAAGACCGCCTTGCTACCACACGTAGTTTCCAATCTCAATTTGAAGCATACCAGAAGGCAAATCAAATGTTTGCCGATGTTGTAAACAAGCACTATGAAGAGGGTGATGTTGTTTGGTGCCATGATTACCATCTTATGTTTCTTCCACAATGCTTAAAGAATTATAACCCCAAAATGAAAGTTGGCTGGTTTCTTCATACCCCATTTCCATCTTCTGAGATTCACAGGACATTGCCTTCTCGTTCAGAGCTTCTGCATGCTGTTCTTGCAGCTGATTTGGTTGGTTTTCACACCTACGACTATGCACGACATTTTGTCAGTGCATGTACCCGCATACTTGGACTTGAGGGAACGCCTGAAGGGGTTGAGAATCAAGGGAAGCTGACTCGAGTAGCAGCATTTCCAATAGGTATAGACTCAGAACGATTCAAACGTGCACTTGACCTTCCTCAAGTGAAGGGTCACATAAAAGAATTACAAGAGAGATTTAAAGGGAGAAAGGTAATGTTAGGTGTTGATCGTCTTGATATGATCAAAGGAATCCCTCAAAAAATTCTGGCATTTGAAAAATTTTTGGAAGAGAGTCCTGATTGGCGTGATAAAGTTGTTCTGCTTCAAATTGCCGTGCCAACAAGGACAGATGTTCCTGAGTATCAAAAGCTTACAAGCCAGGTCCATGAAATTGTTGGTCGCATCAATGGCAGATTTGGAACACTTGCTACCGTTCCCATACATCACCTGGATTGCTCTCTTGATTTTCATAAACTATGTGCTTTGTACGCTGTTACGGATGTAGCACTTGTCACCTCTTTAAGGGATGGAATGAATCTTGTAAGTTACGAATTTGTGGCTTGCCAAGATAAAAAGAAAGGGGTTCTCATTCTCAGCGAATTTGCTGGTGCTGCACAGTCACTTGGCGCTGGGGCAATTCTGGTCAACCCTTGGAACATCACGGAAGTTGCTGCTGCAATTGCCAAGGCTCTGAATATGAAATCAGAAGAACGAGAGAAGAGACATAAGCATAACTTTAAACATGTAACAACCCACACTGCTCAGGAATGGGCAGAAACTTTTGTGAGTGAACTAAATGATACTATTGATGAGGCACAATTAAGGACCAAACAAGTTCCACCAAGGCTCCCAACGGAGATTGCAGTTGAGCGTTATTTGCAGTCAAATAATCGGTTGATTATTTTGGGTTTCAATGGAACTCTAACTGTACCAGTTGAGAGAAAAGGTGATCAGTATCAAGAAACGGAACTTACAGTGCATCCAGAACTGAAACAACCCTTGGCAGAACTTTGCAGTGACCCAAAGACCACAGTTGTTGTGCTTAGTGGAAGTGGTAGACCAGTTCTAGATCAAAACTTCAAAGAGTATGACATCTGGCTAGCAGCAGAGAATGGAATGTTTTTAAACCCTTCTAAGGGAGAATGGATGACAACAATGCCAGAGCAACTAAATATGGAATGGGTTGACAGTGTGAAGCATGTTTTTGACTACTTCACAGATAGAACACCTCGATCACATATTGAAGAAAGGGATGCTTCACTTGTATGGAGTTACAGACATTCAGATGTTGAGTTTGGAAGACTGCAAGCAAGGGACATGCTGCAGCATCTCTGGACAGGGCCAATTTCTAATGCTTCAGTTGAAGTTGTTCAAGGGAGCCGGTCTGTTGAGGTGCGAGCTGCTAATGTTACTAAGGGAGCAGCCATTGACCGTATTCTAGGGGAGATAGTCCACAGTAAATCCATGACAACACCAATTGATTATGTTTTGTGTATAGGACATTTTCTAACAAAGGATGAAGATATATATGCGTTTTTTGAGCCAGAGTTACCTTCTATTGGTGTGGGTCTTCCACGAAGTAAGGTAACAGAAGGAGTTAAGTTTCCTGCGGAGAGGATATCATCGTTGAAGATTCCAGCAAGTAAAAATGGAGCAGCAAAATCATCCCAAAATAAGGGACAACGTGTTGTGCCAAATTCTGAGAAGAAAACAAATAATCATGTGTGCCGTGCGCCACGTCGTCCAGCTCCTGAAAAGATCTCTTGGAATGTCCTTGACCTGAAGAAAGAGAATTACTTTTCTTGTGCTGTTGGAAGAACACAAACGAATGCTCGGTATACGCTTGGATCACCGGATGAAGTTGTTGCATTTCTGAAGGAACTAGTCAACTCATCTCCATACTCTTATGTCTGA 2814 0.4268 MVGFQSDHKPGNKYNGNSNIIPDRVERLMRRRELFKSSKASLLNEAPDSNNNNNNVITEYFEHDPRLREDNNSAASYERLLEGVAAAVRGEREDGKPFKQRLLVVANRLPVSAIRKGEDSWSLEISAGGLVSALLGVKALEARWIGWAGVNVPDEIGQKALTKALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFEAYQKANQMFADVVNKHYEEGDVVWCHDYHLMFLPQCLKNYNPKMKVGWFLHTPFPSSEIHRTLPSRSELLHAVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVENQGKLTRVAAFPIGIDSERFKRALDLPQVKGHIKELQERFKGRKVMLGVDRLDMIKGIPQKILAFEKFLEESPDWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLATVPIHHLDCSLDFHKLCALYAVTDVALVTSLRDGMNLVSYEFVACQDKKKGVLILSEFAGAAQSLGAGAILVNPWNITEVAAAIAKALNMKSEEREKRHKHNFKHVTTHTAQEWAETFVSELNDTIDEAQLRTKQVPPRLPTEIAVERYLQSNNRLIILGFNGTLTVPVERKGDQYQETELTVHPELKQPLAELCSDPKTTVVVLSGSGRPVLDQNFKEYDIWLAAENGMFLNPSKGEWMTTMPEQLNMEWVDSVKHVFDYFTDRTPRSHIEERDASLVWSYRHSDVEFGRLQARDMLQHLWTGPISNASVEVVQGSRSVEVRAANVTKGAAIDRILGEIVHSKSMTTPIDYVLCIGHFLTKDEDIYAFFEPELPSIGVGLPRSKVTEGVKFPAERISSLKIPASKNGAAKSSQNKGQRVVPNSEKKTNNHVCRAPRRPAPEKISWNVLDLKKENYFSCAVGRTQTNARYTLGSPDEVVAFLKELVNSSPYSYV 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2160g00008 937 SUPERFAMILY HAD-like 598 929 IPR036412 -
Vium2160g00008 937 MobiDBLite consensus disorder prediction 848 873 - -
Vium2160g00008 937 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 100 569 - -
Vium2160g00008 937 Gene3D - 688 768 - -
Vium2160g00008 937 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 348 550 - -
Vium2160g00008 937 Pfam Glycosyltransferase family 20 101 566 IPR001830 GO:0003824|GO:0005992
Vium2160g00008 937 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 101 566 IPR012766 GO:0003825|GO:0005992
Vium2160g00008 937 Gene3D Glycogen Phosphorylase B; 93 347 - -
Vium2160g00008 937 CDD HAD_TPP 599 830 - -
Vium2160g00008 937 Gene3D - 602 825 IPR023214 -
Vium2160g00008 937 Pfam Trehalose-phosphatase 621 825 IPR003337 GO:0003824|GO:0005992
Vium2160g00008 937 Gene3D Glycogen Phosphorylase B; 348 550 - -
Vium2160g00008 937 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 93 347 - -
Vium2160g00008 937 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 688 768 - -
Vium2160g00008 937 NCBIfam trehalose-phosphatase 597 813 IPR003337 GO:0003824|GO:0005992
Vium2160g00008 937 CDD GT20_TPS 101 566 IPR001830 GO:0003824|GO:0005992
Vium2160g00008 937 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 93 928 IPR001830 GO:0003824|GO:0005992
Vium2160g00008 937 MobiDBLite consensus disorder prediction 848 872 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2160g00008 Vium-Chr2160 54619 68400 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2160g00008 10 932 Trehalose Biosynthesis Gene Families AT1G78580 74.974 0.0 1433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2160g00008 K16055 - gmx:100789554 1677.14