Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2160g00006 ATGGTTGGATTCCAGAGTGACCATAAGCCCGGGAACAAGTACAATGGAGTGGCAGCGGCAGTGCGGGGCGAGAGGGAGGATGGGAAACCTTTCAAACAAAGGCTTTTGGTAGTGGCCAATAGGCTGCCAGTCTCGGCAATTAGGAAAGGCGAGGATTCGTGGTCCTTGGAGATAAGTGCTGGTGGCCTGGTGAGCGCTCTGTTAGGTGTGAAGGCTTTGGAGGCAAGGTGGATAGGTTGGGCTGGAGTCAATGTGCCAGATGAGATTGGACAAAAAGCACTTACTAAAGCTTTGGCTGAAAAGAGGTGTATCCCAGTATTTCTTGATGAAGAGATTGTTCATCAATATTATAATGGCTATTGTAACAATATTCTCTGGCCCCTTTTTCATTACCTTGGACTTCCACAAGAAGACCGCCTTGCTACCACACGTAGTTTCCAATCTCAATTTGAAGCATACCAGAAGGCAAATCAAATGTTTGCCGATGTTGTAAACAAGCACTATGAAGAGGGTGATGTTGTTTGGTGCCATGATTACCATCTTATGTTTCTTCCACAATGCTTAAAGAATTATAACCCCAAAATGAAAGTTGGCTGGTTTCTTCATACCCCATTTCCATCTTCTGAGATTCACAGGACATTGCCTTCTCGTTCAGAGCTTCTGCATGCTGTTCTTGCAGCTGATTTGGTTGGTTTTCACACCTACGACTATGCACGACATTTTGTCAGTGCATGTACCCGCATACTTGGACTTGAGGGAACGCCTGAAGGGGTTGAGAATCAAGGGAAGCTGACTCGAGTAGCAGCATTTCCAATAGGTATAGACTCAGAACGATTCAAACGTGCACTTGACCTTCCTCAAGTGAAGGGTCACATAAAAGAATTACAAGAGAGATTTAAAGGGAGAAAGGTAATGTTAGGTGTTGATCGTCTTGATATGATCAAAGGAATCCCTCAAAAAATTCTGGCATTTGAAAAATTTTTGGAAGAGAGTCCTGATTGGCGTGATAAAGTTGTTCTGCTTCAAATTGCCGTGCCAACAAGGACAGATGTTCCTGAGTATCAAAAGCTTACAAGCCAGGTCCATGAAATTGTTGGTCGCATCAATGGCAGATTTGGAACACTTGCTACCGTTCCCATACATCACCTGGATTGCTCTCTTGATTTTCATAAACTATGTGCTTTGTACGCTGTTACGGATGTAGCACTTGTCACCTCTTTAAGGGATGGAATGAATCTTGTAAGTTACGAATTTGTGGCTTGCCAAGATAAAAAGAAAGGGGTTCTCATTCTCAGCGAATTTGCTGGTGCTGCACAGTCACTTGGCGCTGGGGCAATTCTGGTCAACCCTTGGAACATCACGGAAGTTGCTGCTGCAATTGCCAAGGCTCTGAATATGAAATCAGAAGAACGAGAGAAGAGACATAAGCATAACTTTAAACATGTAACAACCCACACTGCTCAGGAATGGGCAGAAACTTTTGTGAGTGAACTAAATGATACTATTGATGAGGCACAATTAAGGACCAAACAAGTTCCACCAAGGCTCCCAACGGAGATTGCAGTTGAGCGTTATTTGCAGTCAAATAATCGGTTGATTATTTTGGGTTTCAATGGAACTCTAACTGTACCAGTTGAGAGAAAAGGTGATCAGTATCAAGAAACGGAACTTACAGTGCATCCAGAACTGAAACAACCCTTGGCAGAACTTTGCAGTGACCCAAAGACCACAGTTGTTGTGCTTAGTGGAAGTGGTAGACCAGTTCTAGATCAAAACTTCAAAGAGTATGACATCTGGCTAGCAGCAGAGAATGGAATGTTTTTAAACCCTTCTAAGGGAGAATGGATGACAACAATGCCAGAGCAACTAAATATGGAATGGGTTGACAGTGTGAAGCATGTTTTTGACTACTTCACAGATAGAACACCTCGATCACATATTGAAGAAAGGGATGCTTCACTTGTATGGAGTTACAGACATTCAGATGTTGAGTTTGGAAGACTGCAAGCAAGGGACATGCTGCAGCATCTCTGGACAGGGCCAATTTCTAATGCTTCAGTTGAAGTTGTTCAAGGGAGCCGGTCTGTTGAGGTGCGAGCTGCTAATGTTACTAAGGGAGCAGCCATTGACCGTATTCTAGGGGAGATAGTCCACAGTAAATCCATGACAACACCAATTGATTATGTTTTGTGTATAGGACATTTTCTAACAAAGCAGGATGAAGATATATATGCGTTTTTTGAGCCAGAGTTACCTTCTATTGGTGTGGGTCTTCCACGAAGTAAGGTAACAGAAGGAGTTAAGTTTCCTGCGGAGAGGATATCATCGTTGAAGATTCCAGCAAGTAAAAATGGAGCAGCAAAATCATCCCAAAATAAGGGACAACGTGTTGTGCCAAATTCTGAGAAGAAAACAAATAATCATGTGTGCCGTGCGCCACGTCGTCCAGCTCCTGAAAAGATCTCTTGGAATGTCCTTGACCTGAAGAAAGAGAATTACTTTTCTTGTGCTGTTGGAAGAACACAAACGAATGCTCGGTATACGCTTGGATCACCGGATGAAGTTGTTGCATTTCTGAAGGAACTAGTCAACTCATCTCCATACTCTTATGTCTGA 2616 0.432 MVGFQSDHKPGNKYNGVAAAVRGEREDGKPFKQRLLVVANRLPVSAIRKGEDSWSLEISAGGLVSALLGVKALEARWIGWAGVNVPDEIGQKALTKALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFEAYQKANQMFADVVNKHYEEGDVVWCHDYHLMFLPQCLKNYNPKMKVGWFLHTPFPSSEIHRTLPSRSELLHAVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVENQGKLTRVAAFPIGIDSERFKRALDLPQVKGHIKELQERFKGRKVMLGVDRLDMIKGIPQKILAFEKFLEESPDWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLATVPIHHLDCSLDFHKLCALYAVTDVALVTSLRDGMNLVSYEFVACQDKKKGVLILSEFAGAAQSLGAGAILVNPWNITEVAAAIAKALNMKSEEREKRHKHNFKHVTTHTAQEWAETFVSELNDTIDEAQLRTKQVPPRLPTEIAVERYLQSNNRLIILGFNGTLTVPVERKGDQYQETELTVHPELKQPLAELCSDPKTTVVVLSGSGRPVLDQNFKEYDIWLAAENGMFLNPSKGEWMTTMPEQLNMEWVDSVKHVFDYFTDRTPRSHIEERDASLVWSYRHSDVEFGRLQARDMLQHLWTGPISNASVEVVQGSRSVEVRAANVTKGAAIDRILGEIVHSKSMTTPIDYVLCIGHFLTKQDEDIYAFFEPELPSIGVGLPRSKVTEGVKFPAERISSLKIPASKNGAAKSSQNKGQRVVPNSEKKTNNHVCRAPRRPAPEKISWNVLDLKKENYFSCAVGRTQTNARYTLGSPDEVVAFLKELVNSSPYSYV 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2160g00006 871 Gene3D Glycogen Phosphorylase B; 281 483 - -
Vium2160g00006 871 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 621 701 - -
Vium2160g00006 871 MobiDBLite consensus disorder prediction 782 806 - -
Vium2160g00006 871 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 281 483 - -
Vium2160g00006 871 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 33 502 - -
Vium2160g00006 871 Pfam Trehalose-phosphatase 554 759 IPR003337 GO:0003824|GO:0005992
Vium2160g00006 871 CDD HAD_TPP 532 764 - -
Vium2160g00006 871 Pfam Glycosyltransferase family 20 34 499 IPR001830 GO:0003824|GO:0005992
Vium2160g00006 871 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 26 280 - -
Vium2160g00006 871 MobiDBLite consensus disorder prediction 782 813 - -
Vium2160g00006 871 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 34 499 IPR012766 GO:0003825|GO:0005992
Vium2160g00006 871 SUPERFAMILY HAD-like 531 863 IPR036412 -
Vium2160g00006 871 Gene3D Glycogen Phosphorylase B; 26 280 - -
Vium2160g00006 871 NCBIfam trehalose-phosphatase 530 746 IPR003337 GO:0003824|GO:0005992
Vium2160g00006 871 Gene3D - 535 759 IPR023214 -
Vium2160g00006 871 CDD GT20_TPS 34 499 IPR001830 GO:0003824|GO:0005992
Vium2160g00006 871 Gene3D - 621 701 - -
Vium2160g00006 871 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 28 862 IPR001830 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2160g00006 Vium-Chr2160 54618 68400 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2160g00006 24 866 Trehalose Biosynthesis Gene Families AT1G78580 78.463 0.0 1400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2160g00006 K16055 - gmx:100789554 1582.39