Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2160g00005 ATGGTTGGATTCCAGAGTGACCATAAGCCCGGGAACAAGTACAATGGTAATTCTAATATTATTCCGGATCGTGTTGAACGTCTTATGAGACGAAGAGAGCTTTTTAAAAGCAGCAAGGCATCTCTTTTGAATGAGGCTCCTGATAGTAATAATAATAATAATAATGTGATTACTGAATATTTTGAGCATGACCCGCGCTTAAGGGAAGATAATAACTCTGCTGCTTCCTATGAACGATTACTGGAAGGAGTGGCAGCGGCAGTGCGGGGCGAGAGGGAGGATGGGAAACCTTTCAAACAAAGGCTTTTGGTAGTGGCCAATAGGCTGCCAGTCTCGGCAATTAGGAAAGGCGAGGATTCGTGGTCCTTGGAGATAAGTGCTGGTGGCCTGGTGAGCGCTCTGTTAGGTGTGAAGGCTTTGGAGGCAAGGTGGATAGGTTGGGCTGGAGTCAATGTGCCAGATGAGATTGGACAAAAAGCACTTACTAAAGCTTTGGCTGAAAAGAGGTGTATCCCAGTATTTCTTGATGAAGAGATTGTTCATCAATATTATAATGGCTATTGTAACAATATTCTCTGGCCCCTTTTTCATTACCTTGGACTTCCACAAGAAGACCGCCTTGCTACCACACGTAGTTTCCAATCTCAATTTGAAGCATACCAGAAGGCAAATCAAATGTTTGCCGATGTTGTAAACAAGCACTATGAAGAGGGTGATGTTGTTTGGTGCCATGATTACCATCTTATGTTTCTTCCACAATGCTTAAAGAATTATAACCCCAAAATGAAAGTTGGCTGGTTTCTTCATACCCCATTTCCATCTTCTGAGATTCACAGGACATTGCCTTCTCGTTCAGAGCTTCTGCATGCTGTTCTTGCAGCTGATTTGGTTGGTTTTCACACCTACGACTATGCACGACATTTTGTCAGTGCATGTACCCGCATACTTGGACTTGAGGGAACGCCTGAAGGGGTTGAGAATCAAGGGAAGCTGACTCGAGTAGCAGCATTTCCAATAGGTATAGACTCAGAACGATTCAAACGTGCACTTGACCTTCCTCAAGTGAAGGGTCACATAAAAGAATTACAAGAGAGATTTAAAGGGAGAAAGGTAATGTTAGGTGTTGATCGTCTTGATATGATCAAAGGAATCCCTCAAAAAATTCTGGCATTTGAAAAATTTTTGGAAGAGAGTCCTGATTGGCGTGATAAAGTTGTTCTGCTTCAAATTGCCGTGCCAACAAGGACAGATGTTCCTGAGTATCAAAAGCTTACAAGCCAGGTCCATGAAATTGTTGGTCGCATCAATGGCAGATTTGGAACACTTGCTACCGTTCCCATACATCACCTGGATTGCTCTCTTGATTTTCATAAACTATGTGCTTTGTACGCTGTTACGGATGTAGCACTTGTCACCTCTTTAAGGGATGGAATGAATCTTGTAAGTTACGAATTTGTGGCTTGCCAAGATAAAAAGAAAGGGGTTCTCATTCTCAGCGAATTTGCTGGTGCTGCACAGTCACTTGGCGCTGGGGCAATTCTGGTCAACCCTTGGAACATCACGGAAGTTGCTGCTGCAATTGCCAAGGCTCTGAATATGAAATCAGAAGAACGAGAGAAGAGACATAAGCATAACTTTAAACATGTAACAACCCACACTGCTCAGGAATGGGCAGAAACTTTTGTGAGTGAACTAAATGATACTATTGATGAGGCACAATTAAGGACCAAACAAGTTCCACCAAGGCTCCCAACGGAGATTGCAGTTGAGCGTTATTTGCAGTCAAATAATCGGTTGATTATTTTGGGTTTCAATGGAACTCTAACTGTACCAGTTGAGAGAAAAGGTGATCAGTATCAAGAAACGGAACTTACAGTGCATCCAGAACTGAAACAACCCTTGGCAGAACTTTGCAGTGACCCAAAGACCACAGTTGTTGTGCTTAGTGGAAGTGGTAGACCAGTTCTAGATCAAAACTTCAAAGAGTATGACATCTGGCTAGCAGCAGAGAATGGAATGTTTTTAAACCCTTCTAAGGGAGAATGGATGACAACAATGCCAGAGCAACTAAATATGGAATGGGTTGACAGTGTGAAGCATGTTTTTGACTACTTCACAGATAGAACACCTCGATCACATATTGAAGAAAGGGATGCTTCACTTGTATGGAGTTACAGACATTCAGATGTTGAGTTTGGAAGACTGCAAGCAAGGGACATGCTGCAGCATCTCTGGACAGGGCCAATTTCTAATGCTTCAGTTGAAGTTGTTCAAGGGAGCCGGTCTGTTGAGGTGCGAGCTGCTAATGTTACTAAGGGAGCAGCCATTGACCGTATTCTAGGGGAGATAGTCCACAGTAAATCCATGACAACACCAATTGATTATGTTTTGTGTATAGGACATTTTCTAACAAAGCATTGA 2421 0.4275 MVGFQSDHKPGNKYNGNSNIIPDRVERLMRRRELFKSSKASLLNEAPDSNNNNNNVITEYFEHDPRLREDNNSAASYERLLEGVAAAVRGEREDGKPFKQRLLVVANRLPVSAIRKGEDSWSLEISAGGLVSALLGVKALEARWIGWAGVNVPDEIGQKALTKALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFEAYQKANQMFADVVNKHYEEGDVVWCHDYHLMFLPQCLKNYNPKMKVGWFLHTPFPSSEIHRTLPSRSELLHAVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVENQGKLTRVAAFPIGIDSERFKRALDLPQVKGHIKELQERFKGRKVMLGVDRLDMIKGIPQKILAFEKFLEESPDWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLATVPIHHLDCSLDFHKLCALYAVTDVALVTSLRDGMNLVSYEFVACQDKKKGVLILSEFAGAAQSLGAGAILVNPWNITEVAAAIAKALNMKSEEREKRHKHNFKHVTTHTAQEWAETFVSELNDTIDEAQLRTKQVPPRLPTEIAVERYLQSNNRLIILGFNGTLTVPVERKGDQYQETELTVHPELKQPLAELCSDPKTTVVVLSGSGRPVLDQNFKEYDIWLAAENGMFLNPSKGEWMTTMPEQLNMEWVDSVKHVFDYFTDRTPRSHIEERDASLVWSYRHSDVEFGRLQARDMLQHLWTGPISNASVEVVQGSRSVEVRAANVTKGAAIDRILGEIVHSKSMTTPIDYVLCIGHFLTKH 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2160g00005 806 NCBIfam trehalose-phosphatase 597 804 IPR003337 GO:0003824|GO:0005992
Vium2160g00005 806 Pfam Glycosyltransferase family 20 101 566 IPR001830 GO:0003824|GO:0005992
Vium2160g00005 806 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 93 347 - -
Vium2160g00005 806 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 348 550 - -
Vium2160g00005 806 SUPERFAMILY HAD-like 598 784 IPR036412 -
Vium2160g00005 806 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 101 566 IPR012766 GO:0003825|GO:0005992
Vium2160g00005 806 Gene3D Glycogen Phosphorylase B; 348 550 - -
Vium2160g00005 806 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 688 768 - -
Vium2160g00005 806 CDD GT20_TPS 101 566 IPR001830 GO:0003824|GO:0005992
Vium2160g00005 806 Gene3D Glycogen Phosphorylase B; 93 347 - -
Vium2160g00005 806 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 100 569 - -
Vium2160g00005 806 Pfam Trehalose-phosphatase 621 804 IPR003337 GO:0003824|GO:0005992
Vium2160g00005 806 Gene3D - 688 768 - -
Vium2160g00005 806 Gene3D - 602 782 IPR023214 -
Vium2160g00005 806 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 93 804 IPR001830 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2160g00005 Vium-Chr2160 54617 67876 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2160g00005 10 805 Trehalose Biosynthesis Gene Families AT1G78580 80.074 0.0 1320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2160g00005 K16055 - gmx:100789554 1461.82