Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2160g00001 ATGGCTTCATTCAAAAGCATCAACATTGAAGGTCAAATACCAGAAGAGATTCTGATAGCTCAGATTATGCAACTTCATGCAAGCATCTCAAAGCTTGAATCCCTTAGGCCTTGCAAGCAAGTGAATAGTCTCTTCACTCATCTTGTGAAACTTTGCACTCACCCTTCATCCATTGACATTGAAGCCTTGCCTCAAGAGGTGCAAGAGATGCGTGAGAGCCTCATTAACCTCAGTGGCCATGCCGAGGGACTCTTAGAGCTTGAATTCTCAACCTTCATAAGCCTCACACCCGAGCCCTTCAAGAATGTGACCCTTTTCCCTTACTATTCGAACTATTTGAAACTAGCACACATGGAGAACAAAATCCTGAAAGAGAATGGGATTGTGAATGCAAAGAAAGTCGCTTTTGTGGGATCAGGTCCAATGCCACTCACTTCCATCATAATGGCCACTCACCACATGGAGTCCACACACTTTGACAACTTCGACAACGATGAGAAGGCAAACGAAGTGGCTCGAAAGATTGTTGCTTCCGATGTAGCACTTGAGAAGAGGATGAAGTTTGTGACACAAGACATCATGGACGTGAGCGAGAGGTTGGGGCAATATGATTGTATCTTTTTGGCAGCACTTGTTGGCCTGAATAAGGAAGCAAAAGTGAAGATTTTGGGACATATAAGGAAGTATATGAAAGAGGGAGGAGTTTTGCTTGTGAGAAGTGCAAAAGGGTCAAGAGCTTTCTTGTACCCTGTTATTGAAGAACGTGACATGGTGAATTTTGAGGTTCTTACCATCTTTCACCCCACAAATGATGTGATCAATTCGGTTGTTCTTCTTCGCAAGCCTAAGGCTTAG 855 0.4363 MASFKSINIEGQIPEEILIAQIMQLHASISKLESLRPCKQVNSLFTHLVKLCTHPSSIDIEALPQEVQEMRESLINLSGHAEGLLELEFSTFISLTPEPFKNVTLFPYYSNYLKLAHMENKILKENGIVNAKKVAFVGSGPMPLTSIIMATHHMESTHFDNFDNDEKANEVARKIVASDVALEKRMKFVTQDIMDVSERLGQYDCIFLAALVGLNKEAKVKILGHIRKYMKEGGVLLVRSAKGSRAFLYPVIEERDMVNFEVLTIFHPTNDVINSVVLLRKPKA 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2160g00001 284 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 11 284 IPR004298 GO:0030410|GO:0030418
Vium2160g00001 284 Gene3D Vaccinia Virus protein VP39 16 283 IPR029063 -
Vium2160g00001 284 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 120 240 IPR029063 -
Vium2160g00001 284 CDD AdoMet_MTases 162 238 - -
Vium2160g00001 284 PANTHER NICOTIANAMINE SYNTHASE 3 15 282 IPR004298 GO:0030410|GO:0030418
Vium2160g00001 284 Pfam Nicotianamine synthase protein 15 283 IPR004298 GO:0030410|GO:0030418
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2160g00001 Vium-Chr2160 17466 18428 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2160g00001 11 281 Nicotianamine Synthase Gene Family AT1G56430 48.000 3.18e-90 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2160g00001 K05953 - gmx:100819726 497.278