Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2159g00019 ATGGAGGGTGCTGGGATGGAAGGGAATAATATCAGTGATGACAGTAATAAGTCTGAGGCGCATTTGACTTCCGCCGCTGCTTTTGTGGAGGGTGGAATTCAGGACGCTTGTGATGATGCCTGCAGCATATGCCTTGAAGCCTTCTGTGACAGTGATCCTTCCACGGTTACCAGTTGCAAGCACGAGTTTCATCTTCAGTGCATTCTCGAATGGTGTCAAAGAAGCTCCCAGTGCCCCATGTGTTGGCAACCTATCAGTCTCAAAGATCCAACAAGCCAAGAATTACTTGAGGCAGTGGAAAGAGAGCGAAACTTTAGGATCAATCCACCTAGAAATGCCACAATATTTCATCATCCAACACTGGGGGATTTTGAGTTACAACATTTGCCAGTTGGAGCTAGTGATGCTGATCTTGAAGAGCGTATAATCCAACACTTAGCTGCGGCAGCAGCAATGGGAAGAGCACGCCACATTGCTAGAAGGGAAGGGCAGAGAAACAGGTCATCAGCTCAAGGTCGCCCACACTTTTTAGTTTTTTCGACTCATCCTAATTCGCCTCCCATGGCTCCTACTTCTTCCTCTCCATCTCAGAGGGGAGATGATGAAGCAACTCCTACTATTGCTGTTGCCAATCTGTCTCCATCTCCTGCAACAGGAGAACAATCATCACAACTGACTTTAGTTGCTCCTGTTCAAGCAGAGCAGGTCTCTGCTTCAGGATCTGGATCTAGTGCTCTTGGTACAGAACATCAGGGATCATCGTACAACAATAGGAGATCACCTAATCAGTCATCTCCAAGTAGTCAAGACAGAGCAGGCCCATCAGAATTGCAGTCATTTTCAGAGTCTCTGAAATCTAAACTGAATGCTGTGTCATCAAGGTACAAGGAGTCAATTTCCAAGAGTACCCGAGGGTGGAAGGAGAGATGGTTTTCTCGTAACAATGCTATGTCTGATATTGGATCTGATGTTAGGCGAGAAGTTAATGCAGGGATTGCAACTGTGTCCCGCATGATGGAACGGCTGGAGACCAGAGACAGTAATAGAAGCAATATTAATTCAGCTCCAAGTAATTTAGAGGATGATTCAGTTCAAGGACCTAATGATCAGGCTTTAACTGGCACTGAAGGGGGCGGTCTTTTGGGAGACAATAACACAAAAGCTTCTTGTGCTGCAGGTTCTAGTTCGAGTTAA 1194 0.4606 MEGAGMEGNNISDDSNKSEAHLTSAAAFVEGGIQDACDDACSICLEAFCDSDPSTVTSCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPTSQELLEAVERERNFRINPPRNATIFHHPTLGDFELQHLPVGASDADLEERIIQHLAAAAAMGRARHIARREGQRNRSSAQGRPHFLVFSTHPNSPPMAPTSSSPSQRGDDEATPTIAVANLSPSPATGEQSSQLTLVAPVQAEQVSASGSGSSALGTEHQGSSYNNRRSPNQSSPSSQDRAGPSELQSFSESLKSKLNAVSSRYKESISKSTRGWKERWFSRNNAMSDIGSDVRREVNAGIATVSRMMERLETRDSNRSNINSAPSNLEDDSVQGPNDQALTGTEGGGLLGDNNTKASCAAGSSSS 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2159g00019 397 MobiDBLite consensus disorder prediction 236 283 - -
Vium2159g00019 397 SUPERFAMILY RING/U-box 34 89 - -
Vium2159g00019 397 MobiDBLite consensus disorder prediction 348 372 - -
Vium2159g00019 397 MobiDBLite consensus disorder prediction 157 202 - -
Vium2159g00019 397 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 90 IPR013083 -
Vium2159g00019 397 MobiDBLite consensus disorder prediction 379 397 - -
Vium2159g00019 397 MobiDBLite consensus disorder prediction 341 397 - -
Vium2159g00019 397 ProSiteProfiles Zinc finger RING-type profile. 41 81 IPR001841 -
Vium2159g00019 397 FunFam E3 ubiquitin-protein ligase RHF2A 12 115 - -
Vium2159g00019 397 CDD RING-H2_RHF2A 28 90 - -
Vium2159g00019 397 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 18 90 - -
Vium2159g00019 397 MobiDBLite consensus disorder prediction 184 201 - -
Vium2159g00019 397 Pfam Ring finger domain 40 81 IPR001841 -
Vium2159g00019 397 SMART ring_2 41 81 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2159g00019 Vium-Chr2159 76559 80810 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2159g00019 38 81 C3H Transcription Factor Family AT5G15790 50.000 4.73e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2159g00019 K19043 - gmx:100814908 678.707