Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2159g00018 ATGGAGGGTGCTGGGATGGAAGGGAATAATATCAGTGATGACAGTAATAAGTCTGAGGCGCATTTGACTTCCGCCGCTGCTTTTGTGGAGGGTGGAATTCAGGACGCTTGTGATGATGCCTGCAGCATATGCCTTGAAGCCTTCTGTGACAGTGATCCTTCCACGGTTACCAGTTGCAAGCACGAGTTTCATCTTCAGTGCATTCTCGAATGGTGTCAAAGAAGCTCCCAGTGCCCCATGTGTTGGCAACCTATCAGTCTCAAAGATCCAACAAGCCAAGAATTACTTGAGGCAGTGGAAAGAGAGCGAAACTTTAGGATCAATCCACCTAGAAATGCCACAATATTTCATCATCCAACACTGGGGGATTTTGAGTTACAACATTTGCCAGTTGGAGCTAGTGATGCTGATCTTGAAGAGCGTATAATCCAACACTTAGCTGCGGCAGCAGCAATGGGAAGAGCACGCCACATTGCTAGAAGGGAAGGGCAGAGAAACAGGTCATCAGCTCAAGGTCGCCCACACTTTTTAGTTTTTTCGACTCATCCTAATTCGCCTCCCATGGCTCCTACTTCTTCCTCTCCATCTCAGAGGGGAGATGATGAAGCAACTCCTACTATTGCTGTTGCCAATCTGTCTCCATCTCCTGCAACAGGAGAACAATCATCACAACTGACTTTAGTTGCTCCTGTTCAAGCAGAGCAGGTCTCTGCTTCAGGATCTGGATCTAGTGCTCTTGGTACAGAACATCAGGGATCATCGTACAACAATAGGAGATCACCTAATCAGTCATCTCCAAGTAGTCAAGACAGAGCAGGCCCATCAGAATTGCAGTCATTTTCAGAGTCTCTGAAATCTAAACTGAATGCTGTGTCATCAAGGTACAAGGAGTCAATTTCCAAGAGTACCCGAGGGTGGAAGGAGAGATGGTTTTCTCGTAACAATGCTATGTCTGATATTGGATCTGATGTTAGGCGAGAAGTTAATGCAGGGATTGCAACTGTGTCCCGCATGATGGAACGGCTGGAGACCAGAGACAGTAATAGAAGCAATATTAATTCAGCTCCAAGTTCTAGTTCGAGTTAA 1086 0.4622 MEGAGMEGNNISDDSNKSEAHLTSAAAFVEGGIQDACDDACSICLEAFCDSDPSTVTSCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPTSQELLEAVERERNFRINPPRNATIFHHPTLGDFELQHLPVGASDADLEERIIQHLAAAAAMGRARHIARREGQRNRSSAQGRPHFLVFSTHPNSPPMAPTSSSPSQRGDDEATPTIAVANLSPSPATGEQSSQLTLVAPVQAEQVSASGSGSSALGTEHQGSSYNNRRSPNQSSPSSQDRAGPSELQSFSESLKSKLNAVSSRYKESISKSTRGWKERWFSRNNAMSDIGSDVRREVNAGIATVSRMMERLETRDSNRSNINSAPSSSSS 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2159g00018 361 CDD RING-H2_RHF2A 28 90 - -
Vium2159g00018 361 MobiDBLite consensus disorder prediction 236 283 - -
Vium2159g00018 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 90 IPR013083 -
Vium2159g00018 361 MobiDBLite consensus disorder prediction 157 202 - -
Vium2159g00018 361 FunFam E3 ubiquitin-protein ligase RHF2A 12 115 - -
Vium2159g00018 361 MobiDBLite consensus disorder prediction 184 201 - -
Vium2159g00018 361 Pfam Ring finger domain 40 81 IPR001841 -
Vium2159g00018 361 SMART ring_2 41 81 IPR001841 -
Vium2159g00018 361 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 18 90 - -
Vium2159g00018 361 SUPERFAMILY RING/U-box 34 89 - -
Vium2159g00018 361 ProSiteProfiles Zinc finger RING-type profile. 41 81 IPR001841 -
Vium2159g00018 361 MobiDBLite consensus disorder prediction 340 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2159g00018 Vium-Chr2159 76558 80810 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2159g00018 38 89 C3H Transcription Factor Family AT4G00335 44.231 4.98e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2159g00018 K19043 - gmx:100814908 608.986