Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2158g00001 ATGGCATTAACTTCTTCTTCTTTGACAAGCTTGACATTATTCCTTTGCCTGTGTGTGTTTTGTGTTAATGCAGTCACCTACAGAGAAATTTTGCAAACAGGACAATCACTGGGAACCTCAGACTCGGTTGTTTCTGACAGCGGGAAGTTCGAATTGTGCTTTTTCACCAGAGTCAGAGATAACTCAACCAAGTACTACGTTGGTATACGGTATAAAAGGGTTCCAAACGACAAGAACAAGATTGTGTGGGTTGCAAACCGAGACTACGCACTTGAAACATCCTCAGCAGTTCTTACCTTTCAACCTGGTGGAAATTTTGTGATCATGGATGGACAAGTCACATACCGTGTCAACAACGTTTCAAATAATTTCAGTATGTATGCCATGCTCTTGGATTCAGGAAACTTAATACTGCTGAAAACCTCAAATAAACAGATTTTGTGGCAGAGTTTTGATCATCCGACGGACACCCTTCTACTCGGAATGAAACTAGGACATGATAAAGGAAACACTTGGTCATTGCAATCATGGAGAAGTGCAGATGACCCTGCCCCAGGAGCTTTTTCCCTCGAATATGATTTGGGCAGGGTCAGCCTAATCATCAACAATGGTTCTAATGCGTTCTGGATTGACGACCACTACAACGATACTATTGGCAATTTTATTAGCCGAAGTGGTGGGGATAAGCACGACTACAACGATACTTATTTTTATGTCGGCGACTATTTCAGTTTGCCAGTTGGTAATGACTCTAGGCTGGTACTAGAAGTGTCTGGTGAGCTCATCCAGGAGTATTGGTCTGATGAACAACAACATTGGGTTTCTATTCAGTCATCCAAGTGTGCTACTAATTCGTGTGGAGCCTTTTCCATCTGTAACCCGAAAGCTCGTGACCCTTGTGACTGTCTTTATGGTTTCAGGCCCTCTGATGCTGATTCTTGGAACAATGGGAACAAATCTGCTGGCTGTGTAAGGAACAAAGACTTATCGTCCTGCAGTAACGGTGCTGAATCCAACGATAAATTCCAGCAACTTTATAATGTTAAATCACCAACTTTGGACAGTCTCAGGAAGATTAATACAACAAAAGAGTGTGAAAGTACTTGTTCTAGAAACTGTTTTTGCGTTGCTTTCGCTTACTATTTGAACGGTGATTGCCAGTTGTGGCTTGGTTCCGTATTAAATCTAAAGAACGTCTCAACAGATGTGGACAATTCTGATGATAGCAATTCAATTTTTTACCTAAGACTTGCTGCCTCAGAATTCGATACTTCTGGTAAGTTCAAGAAGCTTTTCTCTGCAGATTCCAACACAACAAGAGAAAAAGAATCACGATATACTTCTGTTAGCAACATCCTACTTCTTATTGTTATATTGATCTCCTTTCTAGCTTTTCTTATATTGGGCCTTTTAGTTTACTGGATTACAAAGAACAGGAGAAAAGGGGAAGATTTGCTCCATTTTGATATAAGCATGAGCATGAAAGTTGAAGATTCTGAGCTTACTGAATCAGATAGGAGTGCCAAAGTGAAGAAGGAAGTGAAATTGCCTTTATTCAGTTTCGAGAGTGTTGCAGCTGCTACTAATAATTTCTCAGATGCAAATAAACTTGGTGAGGGGGGCTTTGGACCCGTTTACAAGGGTACATTATTTAATGGGGATGAGGTTGCCGTGAAAAGACTGTCACGGAGATCTGGTCAAGGATGGGAAGAGTTGAGAAATGAAGCTTTGTTAATTGCAAAACTCCAACACAACAATCTTGTTAGACTTCTTGGTTGCTGCATTGATCGAAATGAAAAGATGCTCATTTATGAGTTTATGCCTAATAAAAGTTTGGATCTTTTCCTTTTTGATGCAACGAAGAAACAGATGCTAGATTGGGGAACAAGAATCAGAATAATAGATGGGATTGCCCAAGGAATTCTTTATCTTCATCAGTATTCCAGGTTCAGGATCATTCACCGAGATTTAAAAGCTAGCAACATATTGTTGGACAGCCATATGAATCCCAAAATATCAGATTTTGGATTGGCAAAGATATTTGGTGATAATGAGCTTCAAGCAAATACAAATCGAATAGTTGGAACATATGGTTACATGGCTCCTGAATATGCTGTAGAAGGACTTTTCTCAATAAAATCGGACGTGTTTAGTTTTGGGGTCCTTTTGTTGGAGATTGTAAGTGGCAAGAAGAATACTGGCTTTTATCAAACGAGTTCCTTCAATCTTCTTGGATATGCTTGGGATCTTTGGACGAGAAATTCAGGACTGGATCTAATGGATAGTGCATTAGATGACAGTGATAATTTAAGTAATAACAGTCTGCATACTGTGCCAAGATATGTGAACATAGGACTTCTTTGTGTTCAAGAAAGTCCAGAAGATAGGCCAACCATGTCTGATGTTGTATCAATGATTGGGAATGACACTGTGTCCCTTCCTTCTCCTAAACCACCTGCATTTCTTANGTAG 2472 0.3985 MALTSSSLTSLTLFLCLCVFCVNAVTYREILQTGQSLGTSDSVVSDSGKFELCFFTRVRDNSTKYYVGIRYKRVPNDKNKIVWVANRDYALETSSAVLTFQPGGNFVIMDGQVTYRVNNVSNNFSMYAMLLDSGNLILLKTSNKQILWQSFDHPTDTLLLGMKLGHDKGNTWSLQSWRSADDPAPGAFSLEYDLGRVSLIINNGSNAFWIDDHYNDTIGNFISRSGGDKHDYNDTYFYVGDYFSLPVGNDSRLVLEVSGELIQEYWSDEQQHWVSIQSSKCATNSCGAFSICNPKARDPCDCLYGFRPSDADSWNNGNKSAGCVRNKDLSSCSNGAESNDKFQQLYNVKSPTLDSLRKINTTKECESTCSRNCFCVAFAYYLNGDCQLWLGSVLNLKNVSTDVDNSDDSNSIFYLRLAASEFDTSGKFKKLFSADSNTTREKESRYTSVSNILLLIVILISFLAFLILGLLVYWITKNRRKGEDLLHFDISMSMKVEDSELTESDRSAKVKKEVKLPLFSFESVAAATNNFSDANKLGEGGFGPVYKGTLFNGDEVAVKRLSRRSGQGWEELRNEALLIAKLQHNNLVRLLGCCIDRNEKMLIYEFMPNKSLDLFLFDATKKQMLDWGTRIRIIDGIAQGILYLHQYSRFRIIHRDLKASNILLDSHMNPKISDFGLAKIFGDNELQANTNRIVGTYGYMAPEYAVEGLFSIKSDVFSFGVLLLEIVSGKKNTGFYQTSSFNLLGYAWDLWTRNSGLDLMDSALDDSDNLSNNSLHTVPRYVNIGLLCVQESPEDRPTMSDVVSMIGNDTVSLPSPKPPAFLX 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2158g00001 823 ProSiteProfiles Protein kinase domain profile. 531 811 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2158g00001 823 CDD PAN_AP_plant 330 418 - -
Vium2158g00001 823 SUPERFAMILY Protein kinase-like (PK-like) 514 805 IPR011009 -
Vium2158g00001 823 PIRSF SRK 1 823 IPR024171 GO:0004674
Vium2158g00001 823 Pfam Protein tyrosine and serine/threonine kinase 535 805 IPR001245 GO:0004672|GO:0006468
Vium2158g00001 823 ProSitePatterns Serine/Threonine protein kinases active-site signature. 652 664 IPR008271 GO:0004672|GO:0006468
Vium2158g00001 823 SMART serkin_6 531 806 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2158g00001 823 ProSiteProfiles PAN/Apple domain profile. 332 418 IPR003609 -
Vium2158g00001 823 SUPERFAMILY alpha-D-mannose-specific plant lectins 81 183 IPR036426 -
Vium2158g00001 823 SMART blect_4 28 154 IPR001480 -
Vium2158g00001 823 Gene3D - 23 152 IPR036426 -
Vium2158g00001 823 Gene3D Phosphorylase Kinase; domain 1 505 606 - -
Vium2158g00001 823 Pfam D-mannose binding lectin 81 178 IPR001480 -
Vium2158g00001 823 Pfam S-locus glycoprotein domain 250 309 IPR000858 GO:0048544
Vium2158g00001 823 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 121 821 - -
Vium2158g00001 823 Pfam PAN-like domain 332 395 IPR003609 -
Vium2158g00001 823 CDD B_lectin 28 154 IPR001480 -
Vium2158g00001 823 FunFam Uncharacterized protein 506 606 - -
Vium2158g00001 823 ProSiteProfiles Bulb-type lectin domain profile. 28 151 IPR001480 -
Vium2158g00001 823 CDD STKc_IRAK 537 806 - -
Vium2158g00001 823 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 607 814 - -
Vium2158g00001 823 Gene3D Transferase(Phosphotransferase) domain 1 607 812 - -
Vium2158g00001 823 SMART ntp_6 337 409 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2158g00001 Vium-Chr2158 15038 19038 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2158g00001 452 822 Receptor kinase-like Gene Family AT4G23190 51.200 1.02e-124 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium2158g00001 PK_Tyr_Ser-Thr 3.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2158g00001 - - pvu:PHAVU_011G149500g 1120.53