Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2153g00011 ATGGATTTGGCTCGTGGTTTGGGGTTCGACCCTGGTGATCGTGCTGAGTTTTGTAACCAGGTGAAGTTCTTCAAAGGTGATCCTTTTAGATCCCATTCTGTACCTGAGAGAAGGGTGTTGGTGTCCTTGGAGAGAATTCTTAGTAACTGGTCTGCGGAGCCTGTCACTGTGACCCCCAATTGGGACTTTGAAATTGCTGAAGATGCTGCTGCTCCTGTTTTTCCATTTAAGAGTTTTCTCTGCCCCTTGACCAAGGAAGTCATGAGGGACCCTGTGGTTGTTCTGGAGTCTTCTCAGGCCTATGAGAGGGCTGCTATTGAGTACTGGTTTGAACGGTGCATTCAAGATGGCCGTGATCCCACTTGTCCGGTTACTGGCACGGTTCTTAAGTCCTTGGAGCTGAAACCTAATATTGGGTTGGCTGGGGCAATTGAAGAGTGGGTTGGCAGGGTTATCGATTATCAAATCAAATCTTCAGTGCAGTCTCTTAATGAGGAACCCTTGTCTGTTGATCAAGTTGAGCGTGCTCTGGATCATGTTTATAAGGTTTCTGAAGAGCACCCCTCTAGCAGATACATAATCAGAAATGCTGGTGTTGTGCAGTTGATAGTAACACTGCTCAGTAATAACTCCAAAACTATTGGATCACGTTTGAGAAGCAAAGCTCTAACGACTTTACTTAGTATGGCCAAGGATGAAGAAAGCAAGAAAATAATGCTGGAACGGGGTATCACTAGATTGGCCGTACATAGTCTTATTGGGAGCTCTACGAAGGAGAGAGAATATGCTACCAAGTTATTACTGGAATTCTGCAATGATGAAGATTGTTGTGCAAGAATAGCATCAGAAAAGGGTGCTTTAGTTCTTCTCTCAAGTATAGCAGGAAATATGGAGTATCCTTCTTTGTCAAAATTAGCTGAGGAAGTCTTGAGGCTAATGGAGAGGGTAGAGGATAATGTTCAATGTTTGGCAGCAGCTGGAAGATTTGGACCATTGATTTCACGGTTACGTGATGGTTCTGTTGGTGTAAAGATAGAGATGGCTTCTCTGGTGGGAAGGATGACTTTGACAAATAGCTGTAAAGAACAAATTGCAAGGCAAGGTGCCCGAGTATTTGTTGAACTTCTGTCTCATCAAGAAGGAAGGGGACCGAGTCTGCAAGCATTGTATAATTTGTCAGGATTGGATGGCAATGCAACTATCCTTATTGAGTCTTCAGTTCTTCCATCTCTTATAGAAGTTTTATTTGATACTGAGGATTCATCTCATGAGCTGAAGTCATTAGCAGCTTCAACAATTGCGAATATTGTATCTAAGCCAGGGCATTGGGAATTAGCATCTGCTGACAAGGATGGAAACCCAATGCATTCAGAAATTATTGTTTTAAGACTTTTGGGGCTTTTGAACTGCTTGCCTTCTCAGTGTCAAGTGATAGTTCTTCGCATTCTTTGTGGTATTACATTATCTCCTCAAGCATCAGAGTTAGTAGCAAGCCATATCACGTCTAAGGGTGGCTTTGGAACGATTATACCATTTCTGGAACATCTAGAAGTTGAACATAGAGTGTTTGCTTTTAAGCTTACAAGGCTACTATCTGAATGGTTTAGTCAATACATTGCAAATGAGTTGAGACTTTCAAACAAGCTTACTATACTCAAAGAAAAACTGTTAAATAACCAATCTACAAGTGATGAGAGATCAGATGCAGCACAGATACTTGCCAATATTTCCCTCTCAGAAGATGAAATACGGACACTTTTAGGAGGTAATTTTGTGGAATGGACTGCTGTTACTCTCAAGAATCAGCTGCGTGTTTCCAATGCAAGGTCTTCTCAGACTGCAGCAGGCATGCAGGAAGGTCTTATAGGTCTCTTGCTTCACTTCACTAGGAACCTTGATCAAGAAACTCTTAATATAATTAGAGAAAATCACCTTATGGCCATTTTCTGCGAGCAGCTAGATTATAGTTCAAAACCAAAGGTAAAACGACTAGCTGCCATCGGACTGAAAAACTTGTCTGAATTTGGAAGGTCAGATACTGCTAGGGATTCTAAACCACCATCTTCTAGTGGATTCTGTTCCTCCCTTGTGCTTGTGTGCGGGAGAGCCTCTAGTCAACCTTCCACCTGTCCAATTCACAACCGTCCGTGCCATGAAGATAGTCAATTGTGCCTACTCAAGAGCAACTGTATCAAACCCCTGGTTAATATCCTCAATGACAGTGACACCGATGTTCAACTAGCTGCAGTGGATGCACTTTCTACTCTACTACTACTAGATCACACATCTCGCAGTTTTAAAAGAGTTGTTGATGAGCTTGAACATTTGGGTGCAGTTGATGCTCTTACCACTCTTTTTACTGAAGTTAGATCTGAGGAGCTTCGGGAGAAGACAATTTGGATGATCGAAAAGATATTGAGAGTGGAAAATATCAGCAGTCGGTATGCACTCAATCATTCTCTTGTGAGAGCTTTGGTTGAAGCCTTTAAGCATGGCAATACCAACACGAGGAAACATGCTCAAGATGCTCTTACCCTTCTAAAGCAGTTATCAGGAGTTAGTGGAAAGACATCAAGTCAAACTCGAATCAAGAGATAG 2598 0.4222 MDLARGLGFDPGDRAEFCNQVKFFKGDPFRSHSVPERRVLVSLERILSNWSAEPVTVTPNWDFEIAEDAAAPVFPFKSFLCPLTKEVMRDPVVVLESSQAYERAAIEYWFERCIQDGRDPTCPVTGTVLKSLELKPNIGLAGAIEEWVGRVIDYQIKSSVQSLNEEPLSVDQVERALDHVYKVSEEHPSSRYIIRNAGVVQLIVTLLSNNSKTIGSRLRSKALTTLLSMAKDEESKKIMLERGITRLAVHSLIGSSTKEREYATKLLLEFCNDEDCCARIASEKGALVLLSSIAGNMEYPSLSKLAEEVLRLMERVEDNVQCLAAAGRFGPLISRLRDGSVGVKIEMASLVGRMTLTNSCKEQIARQGARVFVELLSHQEGRGPSLQALYNLSGLDGNATILIESSVLPSLIEVLFDTEDSSHELKSLAASTIANIVSKPGHWELASADKDGNPMHSEIIVLRLLGLLNCLPSQCQVIVLRILCGITLSPQASELVASHITSKGGFGTIIPFLEHLEVEHRVFAFKLTRLLSEWFSQYIANELRLSNKLTILKEKLLNNQSTSDERSDAAQILANISLSEDEIRTLLGGNFVEWTAVTLKNQLRVSNARSSQTAAGMQEGLIGLLLHFTRNLDQETLNIIRENHLMAIFCEQLDYSSKPKVKRLAAIGLKNLSEFGRSDTARDSKPPSSSGFCSSLVLVCGRASSQPSTCPIHNRPCHEDSQLCLLKSNCIKPLVNILNDSDTDVQLAAVDALSTLLLLDHTSRSFKRVVDELEHLGAVDALTTLFTEVRSEELREKTIWMIEKILRVENISSRYALNHSLVRALVEAFKHGNTNTRKHAQDALTLLKQLSGVSGKTSSQTRIKR 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2153g00011 865 Coils Coil 306 326 - -
Vium2153g00011 865 SMART arm_5 633 674 IPR000225 GO:0005515
Vium2153g00011 865 SMART arm_5 718 758 IPR000225 GO:0005515
Vium2153g00011 865 SMART arm_5 187 231 IPR000225 GO:0005515
Vium2153g00011 865 SMART arm_5 395 438 IPR000225 GO:0005515
Vium2153g00011 865 SMART arm_5 766 807 IPR000225 GO:0005515
Vium2153g00011 865 SMART arm_5 357 394 IPR000225 GO:0005515
Vium2153g00011 865 Gene3D - 715 861 IPR011989 -
Vium2153g00011 865 SUPERFAMILY ARM repeat 161 442 IPR016024 -
Vium2153g00011 865 SUPERFAMILY ARM repeat 388 805 IPR016024 -
Vium2153g00011 865 SUPERFAMILY RING/U-box 76 148 - -
Vium2153g00011 865 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 149 IPR013083 -
Vium2153g00011 865 ProSiteProfiles U-box domain profile. 74 154 IPR003613 GO:0004842|GO:0016567
Vium2153g00011 865 Pfam U-box domain 79 148 IPR003613 GO:0004842|GO:0016567
Vium2153g00011 865 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 57 855 - -
Vium2153g00011 865 Gene3D - 150 676 IPR011989 -
Vium2153g00011 865 Pfam Armadillo/beta-catenin-like repeat 724 756 IPR000225 GO:0005515
Vium2153g00011 865 CDD RING-Ubox_PUB 79 134 IPR045210 -
Vium2153g00011 865 SMART Ubox_2 78 147 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2153g00011 Vium-Chr2153 168950 175047 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2153g00011 76 854 U-box Gene Family AT1G20780 29.597 3.95e-86 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2153g00011 - - gmx:102659945 1496.1