Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2153g00010 ATGTCCATCCACTATTCTCCGCCCTCGTTGCCCACCCTCCAATCCATCCGCCGCTCTCTCTCCGATATCTCTTCCCCGCCGCCAGACCACCGCCCCTTCGACACTCCCCGACGCTTCGCCGCCTTCGCCAACCGCCTCTCCCAACTGCTCCTCCCCCCACTTCCTCAATCTCCCCCTGTCCACACCGCTCTCAAGGGACTCGCCGCCGAGCTCTCCAAGGCTGCCGAAACCCTCTCCGTCTATAACAACGGCAGCAAGATTCTCGTCCTCGTCCACTGTAAATCCCTATGCTCCTCCCTTCAAGATCGCGCTGTAGCCATTGCCGCCTGGCTCGCACTCCTCGCTTCCGCCCTCCCATCCGGCAACAGCGACGACGACTTCCGCAAGAAGGTCTCCGACCTCGCCAGAGACATGAAGCTCGCCCAGTTCAGAGTCTCAGAGAACGAAGAGAGGGTTTGGTGCACGCTGGAAAAGGAAGGAGATGGGAGAGACAGCAGTAAAGCAGTGCAAAGTGGTATTGTCATGGATTTGGCTCGTGGTTTGGGGTTCGACCCTGGTGATCGTGCTGAGTTTTGTAACCAGGTGAAGTTCTTCAAAGGTGATCCTTTTAGATCCCATTCTGTACCTGAGAGAAGGGTGTTGGTGTCCTTGGAGAGAATTCTTAGTAACTGGTCTGCGGAGCCTGTCACTGTGACCCCCAATTGGGACTTTGAAATTGCTGAAGATGCTGCTGCTCCTGTTTTTCCATTTAAGAGTTTTCTCTGCCCCTTGACCAAGGAAGTCATGAGGGACCCTGTGGTTGTTCTGGAGTCTTCTCAGGCCTATGAGAGGGCTGCTATTGAGTACTGGTTTGAACGGTGCATTCAAGATGGCCGTGATCCCACTTGTCCGGTTACTGGCACGGTTCTTAAGTCCTTGGAGCTGAAACCTAATATTGGGTTGGCTGGGGCAATTGAAGAGTGGGTTGGCAGGGTTATCGATTATCAAATCAAATCTTCAGTGCAGTCTCTTAATGAGGAACCCTTGTCTGTTGATCAAGTTGAGCGTGCTCTGGATCATGTTTATAAGGTTTCTGAAGAGCACCCCTCTAGCAGATACATAATCAGAAATGCTGGTGTTGTGCAGTTGATAGTAACACTGCTCAGTAATAACTCCAAAACTATTGGATCACGTTTGAGAAGCAAAGCTCTAACGACTTTACTTAGTATGGCCAAGGATGAAGAAAGCAAGAAAATAATGCTGGAACGGGGTATCACTAGATTGGCCGTACATAGTCTTATTGGGAGCTCTACGAAGGAGAGAGAATATGCTACCAAGTTATTACTGGAATTCTGCAATGATGAAGATTGTTGTGCAAGAATAGCATCAGAAAAGGGTGCTTTAGTTCTTCTCTCAAGTATAGCAGGAAATATGGAGTATCCTTCTTTGTCAAAATTAGCTGAGGAAGTCTTGAGGCTAATGGAGAGGGTAGAGGATAATGTTCAATGTTTGGCAGCAGCTGGAAGATTTGGACCATTGATTTCACGGTTACGTGATGGTTCTGTTGGTGTAAAGATAGAGATGGCTTCTCTGGTGGGAAGGATGACTTTGACAAATAGCTGTAAAGAACAAATTGCAAGGCAAGGTGCCCGAGTATTTGTTGAACTTCTGTCTCATCAAGAAGGAAGGGGACCGAGTCTGCAAGCATTGTATAATTTGTCAGGATTGGATGGCAATGCAACTATCCTTATTGAGTCTTCAGTTCTTCCATCTCTTATAGAAGTTTTATTTGATACTGAGGATTCATCTCATGAGCTGAAGTCATTAGCAGCTTCAACAATTGCGAATATTGTATCTAAGCCAGGGCATTGGGAATTAGCATCTGCTGACAAGGATGGAAACCCAATGCATTCAGAAATTATTGTTTTAAGACTTTTGGGGCTTTTGAACTGCTTGCCTTCTCAGTGTCAAGTGATAGTTCTTCGCATTCTTTGTGGTATTACATTATCTCCTCAAGCATCAGAGTTAGTAGCAAGCCATATCACGTCTAAGGGTGGCTTTGGAACGATTATACCATTTCTGGAACATCTAGAAGTTGAACATAGAGTGTTTGCTTTTAAGCTTACAAGGCTACTATCTGAATGGTTTAGTCAATACATTGCAAATGAGTTGAGACTTTCAAACAAGCTTACTATACTCAAAGAAAAACTGTTAAATAACCAATCTACAAGTGATGAGAGATCAGATGCAGCACAGATACTTGCCAATATTTCCCTCTCAGAAGATGAAATACGGACACTTTTAGGAGGTAATTTTGTGGAATGGACTGCTGTTACTCTCAAGAATCAGCTGCGTGTTTCCAATGCAAGGTCTTCTCAGACTGCAGCAGGCATGCAGGAAGGTCTTATAGGTCTCTTGCTTCACTTCACTAGGAACCTTGATCAAGAAACTCTTAATATAATTAGAGAAAATCACCTTATGGCCATTTTCTGCGAGCAGCTAGATTATAGTTCAAAACCAAAGGTAAAACGACTAGCTGCCATCGGACTGAAAAACTTGTCTGAATTTGGAAGGTCAGATACTGCTAGGGATTCTAAACCACCATCTTCTAGTGGATTCTGTTCCTCCCTTGTGCTTGTGTGCGGGAGAGCCTCTAGTCAACCTTCCACCTGTCCAATTCACAACCGTCCGTGCCATGAAGATAGTCAATTGTGCCTACTCAAGAGCAACTGTATCAAACCCCTGGTTAATATCCTCAATGACAGTGACACCGATGTTCAACTAGCTGCAGTGGATGCACTTTCTACTCTACTACTACTAGATCACACATCTCGCAGTTTTAAAAGAGTTGTTGATGAGCTTGAACATTTGGGTGCAGTTGATGCTCTTACCACTCTTTTTACTGAAGTTAGATCTGAGGAGCTTCGGGAGAAGACAATTTGGATGATCGAAAAGATATTGAGAGTGGAAAATATCAGCAGTCGGTATGCACTCAATCATTCTCTTGTGAGAGCTTTGGTTGAAGCCTTTAAGCATGGCAATACCAACACGAGGAAACATGCTCAAGATGCTCTTACCCTTCTAAAGCAGTTATCAGGAGTTAGTGGAAAGACATCAAGTCAAACTCGAATCAAGAGATAG 3120 0.4519 MSIHYSPPSLPTLQSIRRSLSDISSPPPDHRPFDTPRRFAAFANRLSQLLLPPLPQSPPVHTALKGLAAELSKAAETLSVYNNGSKILVLVHCKSLCSSLQDRAVAIAAWLALLASALPSGNSDDDFRKKVSDLARDMKLAQFRVSENEERVWCTLEKEGDGRDSSKAVQSGIVMDLARGLGFDPGDRAEFCNQVKFFKGDPFRSHSVPERRVLVSLERILSNWSAEPVTVTPNWDFEIAEDAAAPVFPFKSFLCPLTKEVMRDPVVVLESSQAYERAAIEYWFERCIQDGRDPTCPVTGTVLKSLELKPNIGLAGAIEEWVGRVIDYQIKSSVQSLNEEPLSVDQVERALDHVYKVSEEHPSSRYIIRNAGVVQLIVTLLSNNSKTIGSRLRSKALTTLLSMAKDEESKKIMLERGITRLAVHSLIGSSTKEREYATKLLLEFCNDEDCCARIASEKGALVLLSSIAGNMEYPSLSKLAEEVLRLMERVEDNVQCLAAAGRFGPLISRLRDGSVGVKIEMASLVGRMTLTNSCKEQIARQGARVFVELLSHQEGRGPSLQALYNLSGLDGNATILIESSVLPSLIEVLFDTEDSSHELKSLAASTIANIVSKPGHWELASADKDGNPMHSEIIVLRLLGLLNCLPSQCQVIVLRILCGITLSPQASELVASHITSKGGFGTIIPFLEHLEVEHRVFAFKLTRLLSEWFSQYIANELRLSNKLTILKEKLLNNQSTSDERSDAAQILANISLSEDEIRTLLGGNFVEWTAVTLKNQLRVSNARSSQTAAGMQEGLIGLLLHFTRNLDQETLNIIRENHLMAIFCEQLDYSSKPKVKRLAAIGLKNLSEFGRSDTARDSKPPSSSGFCSSLVLVCGRASSQPSTCPIHNRPCHEDSQLCLLKSNCIKPLVNILNDSDTDVQLAAVDALSTLLLLDHTSRSFKRVVDELEHLGAVDALTTLFTEVRSEELREKTIWMIEKILRVENISSRYALNHSLVRALVEAFKHGNTNTRKHAQDALTLLKQLSGVSGKTSSQTRIKR 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2153g00010 1039 SMART Ubox_2 252 321 IPR003613 GO:0004842|GO:0016567
Vium2153g00010 1039 Pfam U-box domain 253 322 IPR003613 GO:0004842|GO:0016567
Vium2153g00010 1039 SMART arm_5 940 981 IPR000225 GO:0005515
Vium2153g00010 1039 SMART arm_5 531 568 IPR000225 GO:0005515
Vium2153g00010 1039 SMART arm_5 807 848 IPR000225 GO:0005515
Vium2153g00010 1039 SMART arm_5 892 932 IPR000225 GO:0005515
Vium2153g00010 1039 SMART arm_5 361 405 IPR000225 GO:0005515
Vium2153g00010 1039 SMART arm_5 569 612 IPR000225 GO:0005515
Vium2153g00010 1039 SUPERFAMILY RING/U-box 251 322 - -
Vium2153g00010 1039 SUPERFAMILY ARM repeat 559 979 IPR016024 -
Vium2153g00010 1039 CDD RING-Ubox_PUB 253 308 IPR045210 -
Vium2153g00010 1039 Gene3D - 325 850 IPR011989 -
Vium2153g00010 1039 Gene3D - 889 1035 IPR011989 -
Vium2153g00010 1039 SUPERFAMILY ARM repeat 335 616 IPR016024 -
Vium2153g00010 1039 ProSiteProfiles U-box domain profile. 248 328 IPR003613 GO:0004842|GO:0016567
Vium2153g00010 1039 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 250 324 IPR013083 -
Vium2153g00010 1039 Coils Coil 480 500 - -
Vium2153g00010 1039 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 55 1029 - -
Vium2153g00010 1039 Pfam Armadillo/beta-catenin-like repeat 898 930 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2153g00010 Vium-Chr2153 168096 175047 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2153g00010 250 1028 U-box Gene Family AT1G20780 29.597 6.31e-85 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2153g00010 - - gmx:102659945 1751.49