Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2153g00004 ATGGTAATGAAAGGTCTTGATAATGGGAGCAGAAAGCGCAAACGACAGACTTCAAGAAAGCTTGGAGTGGATGCAAAAGTGGAGGTGCGGAGTATGGACAACGGGTTTCAAGGATCGTGGCACCCCGGGACAGTTATCATGTGTGAGGATTTGCAACGGCGTGTCAGATATAACAATATTTTGGATAACGAGGGGGTGTATAATCTTGAGGAGGTTGTGATTGTTTCAAAAGCTTTGGACGGTGATATTGAATGTGCAGATTTCTATGCACGCGGGTTCATTAGGCCACTGCCTCCTTTGGTTGAGTTTGATATGGGGGACCTTGTATATGGTTTATGTGTTGATGTGAACTATGAGGAAGCTTGGTGGGAAGGAGTTATATTTGACTACTGTGATGGAATGGACAAGAGGAGTGTGTTTTTTCCTGATTTGGGTGATGAAATACCGGTTGAAATTCATCAGTTGCGGATTACTCAGGACTGGGATGAAATTACTGAGGAGTGGACCCGACGAGGGAACTGGGTGTTTCTTGATCTGGTGGAGGAGCAGAAGAGGAACTTGTTTGTCACAGTTTCGGCCAAGCAGATTTGGTATGATATACGCATTAAAAAGGAATTTGAGACGATTAGAGAGTGGACATGTAATTTGAAGTACTTGTGGACCGAGTTGATAAAGGAGATAATTAATCACTACTTGTCTCTAACGTTAAAGGAAATTATCTCTGTCCTAAACCTTCCTCGGAGTCTTTTAAATGAAACACCAGAGCATGAATTTGCTGAAGCTATGCCTAATGTTGACCTAAGCATGATCTGGCATAATAAGCAAACTGCTGTGCAGAAAGGAACTGTCCCTCGTATTAAAGGGACCTTATCTGACGTTCAAAATGAAATTAGACCCTGTGGTGATAGTCCTTTTGATGAAAGCAGAGAAGATAGATCCTCAAGTCATTTAATGTCCTCTTTTTGGAATCCTGTGAAGTTGTCTGGGGTTGAATTATGCCCTGATGCTGTTAGGGAATATCCACTTGCTTCCAAACGTGAAGTTAGGGCATTTTGGATGGACAAATTACAAAAGCATCTTTTATGTCTTGGATGGAAAATTGAATGGTCAAATAGATTAAATATTAAACGTTACAAGTATATTTCCCCTTACACGAAGGGCCAAAGGTATTACCTTTCACTCATTGAAGTTTGTAAAGCTATGAAACAGGACCCCAACATGAACTCCTTGCATCTCCAAAATGATCAGACCATAACGCATCCTACAGTTGATTTCCATCTTTCAGATGTGCCTTCTATTCCAGCTGAAAATCTTCAGTCTATAACGCATCTCCAAAATGATCACTCTATAATGCATCCTACAGTTGATTGTCCTCTTTCAGATGTGCCTTCTAATCCAGCTGAAAATATTCAGTCTGTAACGCATCTCCAAAATGATCACACTATAATGCATCCTACAGTTGATTGTCCTCTTTCAGATGTGCCTTCTATTCCAGCTGAAAATATTCAGTCTGTAACGCATCTCCAAAATGATCACACTATAATGCATTCTACAGTTGATTGTCATCTTTCAGATGTGCCTTCTATTCCAGCTGAAAATATTCAGTCTATAATGCATCTCCAAAATGATCACACTATAATGCATCCTACAGTTGATTGCCATCTTTCAGATGTGCCTTCTATTCCAGCTGAAAATATTCAGTCTATAACGCATCTCCAAAATGATCACACTATAATGCATCCTACAGTTGATTGTCATCTTTCAGATGTGCCTTCTATTCCAGCTGAAAATATTCAGTCTATAACGCATCTCCAAAATGATCACACTATAATGCATCCTACAGTTGATTGTCATCTTTCAGATGTGCCTTCTATTCCAGCTGAAAATATTCAGTCTATAACGCATCTCCAAAATGATCACACTATAATGCATCCTACAGTTGATTGTCATCTTTCAGATGTGCCTTCTATTCCAGCTGAAAATATTCAGTCTATAACGCATCTCCAAAATGGTCACACTATAATGCATCCTACAGTTGATTGTCATCTTTCTGATGTGCCTTCTAATCCAGCTGAAAATATTCAGAATCTAGATATCATTCATGCAGCTGAAAATATTCAGAATCTAGATATCATTCCTCCAGCTGAAAATATTCAGAATCTAGATATGTTTCCTCCTGCTGAAAATATTCAGAATCTAGATATCTTTCCTCCTGCTGAAAATATTCAGAATCTAGATATCTTTCCTCCTGCTGTGCCATCTTCTCCCGTTGAAGATGAAGTTGAAGAAGTACCTGAGTATTGTCCTCGGGCTGTTGTGCAGTATTATCGCATGTATATATACAAGAAGAGCCGGGCTGATAAAAAAAAGTGGATACTAAAGGCAAAGAAGCATCTGTTATCAGAGGGATGGGTTTTAGACCATCCACCTCCATTTAATAAGAGAAGGGGAATAATATACATGTCTCCACAAAATCGGAAATTCCCAACACTCCATGCAGCATGCAAATTTTGCATTGAAGAAACTATTCCTAATTGGGACCTTGAATGGCAGGAGATGGATGAAGGTGCTTCTGGTATGAAACCAACTACAAATCAAAAGAAGAAAAACAAGAGGGATTTGAAGGCCAACACACCTAAGGGCCAAAGCAATGGACCTCGACAGGTGCTAAGATCAAATAAGAGGGTGCAAAAGGTGTCTGCCTCTACTCATTTACATCACAAGCCTCTAAACATTCCGTCTTATTTGATAGACAGCAACATCATCTTACCAAGGTCTAAGGTTTATTATAAGGCAAAAGGCACGAACCGTGCAGTCCGAACTTTGGCTGAGGGGAAAATAACTCATGATGGAATCAAGTGTAACTGTTGCCTTACAATATACAGTTTTGCTGGATTTGAAAAACATGCTACTGGCAGTAGTACCTGCAGACCCTCTGCTAATATCTTTTTGGATGACGGGAAGTCACTCTTGGACTGCCAGATACAAATGATGCAAGGTCAAAAGAATAGTGTAGCTAGTGGAAAAGCATTAAGTGATCTTTCTCTAGCTGATAATGACTACATTTGTTCAGTTTGTCGCTATGGTGGTGAACTTATTTTATGTGATAAATGTCCATCCTCATTCCATAAGACGTGTCTTGGTTTGGAGGATGTCCCTGAAGGTGACTGGTTTTGTCCATCATGTCGTTGCGGGATTTGTGGCCAAAGGAAAATTGATGGAGATGAGGTTGAACACTTCCTTTCTTGCATACAATGTGAACATAAATATCATGTTAGGTGCCTGAAAAATGGAGCTGCAAATACATCAAGATATAATGGAAACTGGTTCTGTGGAAAAGACTGTGAAAAGATATTCGAGGGCCTTCATAAATTATTAGGAGAGCCAATTCCAGTGGCTAGCAATCTAACTTGGACTTTGGTGAAGTTTATCAACCCTGACAGTTGTGATCTTGGTAATGTTGAAAGTGATTTAGTGGCAGAAAGTTACTGCAAACTCAATCTTGCTCTTTCGTTGATGCATGAATGTTTTGAGCCCCTAAAAGAACCCTTGACTTCCAGAGATCTCGTGGAAGATGCTCTATTCAGCAGAAGGTCAGAGCTTAACCGAATAAATTTCCAGGGTTTCTACACTGTGCTACTTGAGAGAAATGAAGAACTGGTTAGTGTGGCAACTGTTAGGGTCCATGGGAAGAAGGTAGCTGAAATACCTCTTGTTGGTACCAGATTACAATATCGTCGACATGGAATGTGTCGCATTTTAGTAAATGAGCTTGAAAAGAAGCTCATGAAATTAGATGTGGAGAGGCTGGTTTTGCCGGCTGTTCCTAGTGTGCTAGAGACATGGACCGGCTCTTTTGGCTTTGCAAAGATGACTGATTATGAGAGATCTCAGTTTCTGGACTATACTTTCCTAGATTTTGAGGGTACCATTATGTGCCAAAAGTTGTTGATGAACATAGCATCTTCAGATTCAGTTCCGTTAACAGAGTCTAAACGTTGCTGTTTTAACCCCAGTAAGTCTGGTCCCATATGTGAAGTGCACCAAGGAGAAGCTATTGACGAAAATGCTTGTGCTGGCAATAATGATCACCATGATTTAAGAGCTGTTGACCCATTTAGAATGGTAAAGGAACCGGATCAACAGTGTCAGAAAGGAACAACCAGTAGTGTGTGCTCGTTTGATGAACTAGTTGAAAGGAATGATGATGATCTGTATAAGTTTGTCTACACACGAAAGAAACTGAGAAAATGA 4254 0.4003 MVMKGLDNGSRKRKRQTSRKLGVDAKVEVRSMDNGFQGSWHPGTVIMCEDLQRRVRYNNILDNEGVYNLEEVVIVSKALDGDIECADFYARGFIRPLPPLVEFDMGDLVYGLCVDVNYEEAWWEGVIFDYCDGMDKRSVFFPDLGDEIPVEIHQLRITQDWDEITEEWTRRGNWVFLDLVEEQKRNLFVTVSAKQIWYDIRIKKEFETIREWTCNLKYLWTELIKEIINHYLSLTLKEIISVLNLPRSLLNETPEHEFAEAMPNVDLSMIWHNKQTAVQKGTVPRIKGTLSDVQNEIRPCGDSPFDESREDRSSSHLMSSFWNPVKLSGVELCPDAVREYPLASKREVRAFWMDKLQKHLLCLGWKIEWSNRLNIKRYKYISPYTKGQRYYLSLIEVCKAMKQDPNMNSLHLQNDQTITHPTVDFHLSDVPSIPAENLQSITHLQNDHSIMHPTVDCPLSDVPSNPAENIQSVTHLQNDHTIMHPTVDCPLSDVPSIPAENIQSVTHLQNDHTIMHSTVDCHLSDVPSIPAENIQSIMHLQNDHTIMHPTVDCHLSDVPSIPAENIQSITHLQNDHTIMHPTVDCHLSDVPSIPAENIQSITHLQNDHTIMHPTVDCHLSDVPSIPAENIQSITHLQNDHTIMHPTVDCHLSDVPSIPAENIQSITHLQNGHTIMHPTVDCHLSDVPSNPAENIQNLDIIHAAENIQNLDIIPPAENIQNLDMFPPAENIQNLDIFPPAENIQNLDIFPPAVPSSPVEDEVEEVPEYCPRAVVQYYRMYIYKKSRADKKKWILKAKKHLLSEGWVLDHPPPFNKRRGIIYMSPQNRKFPTLHAACKFCIEETIPNWDLEWQEMDEGASGMKPTTNQKKKNKRDLKANTPKGQSNGPRQVLRSNKRVQKVSASTHLHHKPLNIPSYLIDSNIILPRSKVYYKAKGTNRAVRTLAEGKITHDGIKCNCCLTIYSFAGFEKHATGSSTCRPSANIFLDDGKSLLDCQIQMMQGQKNSVASGKALSDLSLADNDYICSVCRYGGELILCDKCPSSFHKTCLGLEDVPEGDWFCPSCRCGICGQRKIDGDEVEHFLSCIQCEHKYHVRCLKNGAANTSRYNGNWFCGKDCEKIFEGLHKLLGEPIPVASNLTWTLVKFINPDSCDLGNVESDLVAESYCKLNLALSLMHECFEPLKEPLTSRDLVEDALFSRRSELNRINFQGFYTVLLERNEELVSVATVRVHGKKVAEIPLVGTRLQYRRHGMCRILVNELEKKLMKLDVERLVLPAVPSVLETWTGSFGFAKMTDYERSQFLDYTFLDFEGTIMCQKLLMNIASSDSVPLTESKRCCFNPSKSGPICEVHQGEAIDENACAGNNDHHDLRAVDPFRMVKEPDQQCQKGTTSSVCSFDELVERNDDDLYKFVYTRKKLRK 1417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2153g00004 1417 SMART agenet_At_2 106 163 IPR014002 -
Vium2153g00004 1417 CDD NAT_SF 1212 1272 - -
Vium2153g00004 1417 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1156 1306 IPR000182 GO:0016747
Vium2153g00004 1417 MobiDBLite consensus disorder prediction 856 894 - -
Vium2153g00004 1417 PANTHER PHD FINGER PROTEIN 12 766 1350 IPR042163 GO:0003714|GO:0045892
Vium2153g00004 1417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1064 1118 IPR013083 -
Vium2153g00004 1417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1014 1063 IPR013083 -
Vium2153g00004 1417 SUPERFAMILY FYVE/PHD zinc finger 1010 1063 IPR011011 -
Vium2153g00004 1417 SMART ring_2 1064 1114 IPR001841 -
Vium2153g00004 1417 SMART ring_2 1023 1062 IPR001841 -
Vium2153g00004 1417 MobiDBLite consensus disorder prediction 1 21 - -
Vium2153g00004 1417 SMART PHD_3 1064 1115 IPR001965 -
Vium2153g00004 1417 SMART PHD_3 1022 1063 IPR001965 -
Vium2153g00004 1417 Pfam PHD-finger 1022 1064 IPR019787 -
Vium2153g00004 1417 Pfam Tify domain binding domain 945 997 IPR032308 -
Vium2153g00004 1417 Pfam Agenet domain 25 99 IPR008395 -
Vium2153g00004 1417 MobiDBLite consensus disorder prediction 877 894 - -
Vium2153g00004 1417 Gene3D - 1163 1294 - -
Vium2153g00004 1417 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1170 1298 IPR016181 -
Vium2153g00004 1417 CDD Tudor_Agenet_AtDUF_rpt1_3 23 99 - -
Vium2153g00004 1417 ProSiteProfiles Zinc finger PHD-type profile. 1020 1065 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2153g00004 Vium-Chr2153 88722 101333 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2153g00004 30 437 PHD Transcription Factor Family AT5G58610 33.871 5.39e-62 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vium2153g00004 Agenet 4.2e-13 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2153g00004 - - vum:124829293 2924.04