Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2153g00001 ATGATAACCGAAACAAAACTCAAACACAGTTTTCTTGAAGAACAGGAACAAGAACAAGAATCTGCACAGTGCCAACGTTGTTATCGCAATATGTCTTGTTTCGTGGCAGTTCCTAATTCCCCCGTCTTCTCTCTCTTCAACAACAACACCAATAACAATAACTCTTCTTCCATGGCAGAACCTCTCATGCTTTCTCTTCCCATTCCCTCGACCACACCCTCTTGCTCCTCTCCTCCTTCCTCTCCCCTGTTGAAGCGGAGAAGACCTGCAAAACTCGACATTCCCGTCGCTTCTCTCGCACTCACGCTCTCGACGGCGCCGGCGCCGTCTCCGGCGATGGACTCGGTCGTCGAGGTCGACGGAAGCGGGTTTTCTGTGTTCTGCAGACGAGGAAGGAGGGCCCACATGGAGGACCGTTACTCCGCTGCCGTTGATCTTCGCGGTGAACCCAAGCAGGCTTTCTTCGGCATATTCGATGGGCATGGGGGCACAAAAGCTTCGGAATTCGCTGCACATAACTTGGAGAAGAATGTGATGGATGAGGTGGTTAGGAGAGATGAAAGTGACATTGAGGAGGCAGTGAAAAATGGTTACCTCAACACAGATTCTGAATTCTTGAAGGAGGATCTTCATGGTGGCTCTTGCTGTGTGACGGCATTGATATGGAATGGCAACCTTGTTGTGTCTAACGTTGGGGATTGTCGTGCTGTGATTAGCAGAGGCGGGGTGGCAGAAGCCCTCACATCTGATCACAGGCCTTCAAGGGAAGATGAAAGGGACAGAATTGAAACTCAGGGTGGCTATGTTGATGTGTGCCGTGGTGTGTGGAGGATCCAAGGGTCATTGGCTGTTTCTAGGGGAATTGGAGATAGGAACCTGAAACAATGGGTGATAGCAGAACCTGAGACCAAAGTTCTTAAAATTGAACCTCTGCATGACTTGTTGATCTTAGCTTCAGATGGCTTATGGGAAAAGGTTAGCAATCAGGAAGCAGTGGATATTGCTGGTCCTTTTTGTGTAGGTAACAACAGACAACAACCTTTGCAGGCTTGCAAGAAGCTCGTAGATTTATCTGTGTCGCGGGGTTCAGTGGATGATATAAGTGTTATGATCATCAAGTTGCAAAACTATGTTTGA 1137 0.4846 MITETKLKHSFLEEQEQEQESAQCQRCYRNMSCFVAVPNSPVFSLFNNNTNNNNSSSMAEPLMLSLPIPSTTPSCSSPPSSPLLKRRRPAKLDIPVASLALTLSTAPAPSPAMDSVVEVDGSGFSVFCRRGRRAHMEDRYSAAVDLRGEPKQAFFGIFDGHGGTKASEFAAHNLEKNVMDEVVRRDESDIEEAVKNGYLNTDSEFLKEDLHGGSCCVTALIWNGNLVVSNVGDCRAVISRGGVAEALTSDHRPSREDERDRIETQGGYVDVCRGVWRIQGSLAVSRGIGDRNLKQWVIAEPETKVLKIEPLHDLLILASDGLWEKVSNQEAVDIAGPFCVGNNRQQPLQACKKLVDLSVSRGSVDDISVMIIKLQNYV 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2153g00001 378 Pfam Protein phosphatase 2C 124 367 IPR001932 -
Vium2153g00001 378 CDD PP2Cc 123 374 IPR001932 -
Vium2153g00001 378 ProSitePatterns PPM-type phosphatase domain signature. 154 162 IPR000222 GO:0043169
Vium2153g00001 378 ProSiteProfiles PPM-type phosphatase domain profile. 123 374 IPR001932 -
Vium2153g00001 378 FunFam probable protein phosphatase 2C 25 116 377 - -
Vium2153g00001 378 Gene3D - 123 377 IPR036457 -
Vium2153g00001 378 PANTHER PROTEIN PHOSPHATASE 2C 65 373 IPR015655 GO:0004722|GO:0006470
Vium2153g00001 378 SMART PP2C_4 113 372 IPR001932 -
Vium2153g00001 378 SUPERFAMILY PP2C-like 123 376 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2153g00001 Vium-Chr2153 4348 7123 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2153g00001 31 374 PP2C-type Phosphatase Gene Family AT1G07160 58.466 2.53e-141 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2153g00001 K17506 - gmx:100813073 551.206