Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2145g00010 ATGCAAGTATGGGATACTCTGAATTTTTTTGCAGTGTCTGTTATTGATGTAGATTTTGGATTCTCCTTTCCAGAACAGTATGAAAGGCAGTACAGGGACAGGGACCCTGGACCAATTTCAAATGATAACAACAGAAGTTCTCTTGTTCCTCCACAACCACAAGCTTATCGTCCAAGTGCACATGATCAAGGCTCCGAAACATTTAAATCAGCTAACCCTCCACAGAATGTTGTTGGGCCGTCATTGACAAGCAAGGATTCATTGCTTTTAAAGCATAATCGTCCTGCTCATAGAGATACAGAGACCCGATTAATGATTTCTAGCAAACCATCTAGAGAGTTTTCTGTAGATATGGAGGATCTGGACATCCCATGGACTGATCTTGTTTTGAAAGGGAGAATAGGGTCAGGTTCTTTTGGAACTGTACATCAAGCTGAGTGGAATGGCTCGGAGGTTGCTGTGAAAATTTTGATGGAACAAGACTTTGCAGGTGAACGCTTCCAGGAATTCTTGAGGGAGGTTGCAATAATGAAAAGCTTACGGCATCCAAACATTGTTTTACTTATGGGTGCAGTCACTAAGCCTCCCAATTTATCAATTGTCACAGAATACTTGTCCAGGGGTAGCTTGTACAGGCTGTTGCATAAACCTGGTGCCACAGAAATGTTGGATGAGAGACGTAGGATAAGTATGGCTTATGATGTGGCTAAGGGGATGAATTATCTTCATAAACGTAATCCTCCCATTGTTCACAGAGATCTGAAATCTCCAAACCTTCTTGTTGACAAGAAATATACAGTGAAGGTTAGTGATTTTGGGCTTTCCCGACTAAAGGCAAACACATTTCTCTCATCCAAGTCAGCTGCTGGGACACCTGAGTGGATGGCTCCAGAAGTTCTTCGTGATGAGCCATCCAATGAGAAGTCAGATGTTTACAGCTTTGGTGTCATCTTGTGGGAGCTTGCAACATTGCAACAGCCTTGGAGTAATTTGAATCCACCACAGGTTGTGGCAGCTGTTGGCTTTAAGGGAAAAAGACTTGAAATACCACGAGATTTAAATCCTCAAATAGCATCAATAATTGAGGCTTGCTGGGCCAACGAACCCTGGAAACGCCCTTCTTTTTCAAGTATTATGGATTCTTTGAAAGGATTGATCAAACCCCCTGTACCTCAACCTGGTCGTCCAAACATGTCGTTGCTCATTTGA 1209 0.4268 MQVWDTLNFFAVSVIDVDFGFSFPEQYERQYRDRDPGPISNDNNRSSLVPPQPQAYRPSAHDQGSETFKSANPPQNVVGPSLTSKDSLLLKHNRPAHRDTETRLMISSKPSREFSVDMEDLDIPWTDLVLKGRIGSGSFGTVHQAEWNGSEVAVKILMEQDFAGERFQEFLREVAIMKSLRHPNIVLLMGAVTKPPNLSIVTEYLSRGSLYRLLHKPGATEMLDERRRISMAYDVAKGMNYLHKRNPPIVHRDLKSPNLLVDKKYTVKVSDFGLSRLKANTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWSNLNPPQVVAAVGFKGKRLEIPRDLNPQIASIIEACWANEPWKRPSFSSIMDSLKGLIKPPVPQPGRPNMSLLI 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2145g00010 402 FunFam Serine/threonine-protein kinase isoform 1 118 206 - -
Vium2145g00010 402 ProSiteProfiles Protein kinase domain profile. 128 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2145g00010 402 MobiDBLite consensus disorder prediction 40 84 - -
Vium2145g00010 402 SUPERFAMILY Protein kinase-like (PK-like) 105 381 IPR011009 -
Vium2145g00010 402 Pfam Protein tyrosine and serine/threonine kinase 129 382 IPR001245 GO:0004672|GO:0006468
Vium2145g00010 402 CDD STKc_MAP3K-like 134 382 - -
Vium2145g00010 402 PRINTS Tyrosine kinase catalytic domain signature 290 300 IPR001245 GO:0004672|GO:0006468
Vium2145g00010 402 PRINTS Tyrosine kinase catalytic domain signature 202 215 IPR001245 GO:0004672|GO:0006468
Vium2145g00010 402 PRINTS Tyrosine kinase catalytic domain signature 243 261 IPR001245 GO:0004672|GO:0006468
Vium2145g00010 402 PRINTS Tyrosine kinase catalytic domain signature 353 375 IPR001245 GO:0004672|GO:0006468
Vium2145g00010 402 PRINTS Tyrosine kinase catalytic domain signature 309 331 IPR001245 GO:0004672|GO:0006468
Vium2145g00010 402 Gene3D Phosphorylase Kinase; domain 1 121 206 - -
Vium2145g00010 402 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 85 387 - -
Vium2145g00010 402 SMART serkin_6 128 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2145g00010 402 ProSitePatterns Serine/Threonine protein kinases active-site signature. 249 261 IPR008271 GO:0004672|GO:0006468
Vium2145g00010 402 FunFam Serine/threonine-protein kinase CTR1 207 392 - -
Vium2145g00010 402 ProSitePatterns Protein kinases ATP-binding region signature. 134 155 IPR017441 GO:0005524
Vium2145g00010 402 MobiDBLite consensus disorder prediction 31 84 - -
Vium2145g00010 402 Gene3D Transferase(Phosphotransferase) domain 1 207 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2145g00010 Vium-Chr2145 75352 90282 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2145g00010 106 398 MAP Kinase Kinase Kinase AT5G03730 81.229 6.60e-172 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vium2145g00010 PK_Tyr_Ser-Thr 6.9e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2145g00010 K14510 - vum:124829281 815.839