LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium2145g00009	ATGAACCCAAGACAACAAAGTCATCCTCAACTTGTACCAGAGGCACCAATTGGCTTCTCCACCACTCTCTTGCGTTCTCCTGAAGCATTCCCATCATGCTCTTTTCCTCGTTACACTTCAGCTTCTCTTCCACCACCTGACATTGCTCTTTCTGCCTCTCTCCCTTCCTCTTCCTCTCAACCACAGTCTTCCACTCCTTCTTCTTCTTCCAAGTTCCCTTCATCAACAGCAGAGTTTGAGAAGGTAATTACTTTGCCGCATCCCCTTGAATGCTTACAAGGGAATCCGGTTCCGGCATTCTTATCCAAGACTTTCGACCTCGTTGACGATCCATCGTTGGATCCGATCATATCATGGTCCTCCGCTGGTGTTAGTTTCGTGGTGTGGGATCCTACCCTGTTTGCAATACATGTCTTGCCAAGGAATTTCAAGCATAACAATTTCTCCAGTTTTGTTCGCCAGTTAAATACTTATGGATTCCGCAAGATTGACTCTGATAAGTGGGAGTTTTTTAATGAAGCTTTTCAGCGAGGGAAGAGATATCTTCTGAAGAGCATCCAAAGGCGCAGGCATCCTCATCCCCATCAAGTTGGTAGGCATATCGTGCATTGGTCTGATGCAGGTAAGGCTGGGCTTGAATTTGATATAGAAAGACTAGGGAAGGAGAGGAGTGTGTTAATGCAAGAGGTATTTGAGTTGAGGCAACAGCAGAGAACAACACTTCACCGTGCTAGACAAGTGAATCAGAGGCTCCAATCTGCAGAGGTGATACACAAACAGATGCTTTCTTTCCTGGCAAGGTTACTTGAAAACCCTGCGTTGTTAACATGCCTTCAGCATGAGAAAGAACAAAGAGATGTAGAATCTCCTAAAGTGAGAAGGAGGTTTGTCAAGCAGCACCAAGAACGAACAGGAATATCAGATTTTTTGAAGGAAGGACAGATTGTAAGTTACCAACCTGATCGGAGAAATGTAACCATCTCTTCCAAAATACCAGAAATGTGTCCAACTTCCCTTGGAGGGTGTTCAAATTATCTTTCACATGATTTGGCAAAAGAATTGAGTGAAGGTGCTGAGAATCTGGTGTCAGATGGATTGGCCCCCTTGCACGAGGTTATGCCAACTTCTGACACCATTGGGTTAAAGTCATCAAGCTTTGGACTTGAAGATACCCTTTTGAAAGGGAAAACTGTCATGAGCTCAAATCAAGAAGATCTTCTTGCAGAGGAGATTGTTTCTTTCCCAGAGGATTTGACTAATGAGGCTGGATTTCCAGAGTTTTCACCTTTAGTTGAAACAGAAAGCATTATCAAGCCAGAAGATAAATGGAACACCAGCTTTCATTTCAGTGGCGCTCCCCCAGCTACCAACCATGAAGGACAAGAATTTAGATTCATTAGTGGTATGTCAGACATCTGGGATACTTGTTCACTGTGGGCAACACAGAGTTTCCGAACTGATGATCCAGCACTGGATGAATGA	1482	0.4413	MNPRQQSHPQLVPEAPIGFSTTLLRSPEAFPSCSFPRYTSASLPPPDIALSASLPSSSSQPQSSTPSSSSKFPSSTAEFEKVITLPHPLECLQGNPVPAFLSKTFDLVDDPSLDPIISWSSAGVSFVVWDPTLFAIHVLPRNFKHNNFSSFVRQLNTYGFRKIDSDKWEFFNEAFQRGKRYLLKSIQRRRHPHPHQVGRHIVHWSDAGKAGLEFDIERLGKERSVLMQEVFELRQQQRTTLHRARQVNQRLQSAEVIHKQMLSFLARLLENPALLTCLQHEKEQRDVESPKVRRRFVKQHQERTGISDFLKEGQIVSYQPDRRNVTISSKIPEMCPTSLGGCSNYLSHDLAKELSEGAENLVSDGLAPLHEVMPTSDTIGLKSSSFGLEDTLLKGKTVMSSNQEDLLAEEIVSFPEDLTNEAGFPEFSPLVETESIIKPEDKWNTSFHFSGAPPATNHEGQEFRFISGMSDIWDTCSLWATQSFRTDDPALDE	493

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium2145g00009	493	ProSitePatterns	HSF-type DNA-binding domain signature.	139	163	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vium2145g00009	493	Coils	Coil	216	236	-	-
	Vium2145g00009	493	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	86	294	IPR027725	-
	Vium2145g00009	493	SUPERFAMILY	"Winged helix" DNA-binding domain	95	189	IPR036390	-
	Vium2145g00009	493	Gene3D	-	93	190	IPR036388	-
	Vium2145g00009	493	SMART	hsfneu3	96	189	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vium2145g00009	493	Pfam	HSF-type DNA-binding	100	189	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vium2145g00009	493	MobiDBLite	consensus disorder prediction	49	73	-	-
	Vium2145g00009	493	PRINTS	Heat shock factor (HSF) domain signature	151	163	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vium2145g00009	493	PRINTS	Heat shock factor (HSF) domain signature	138	150	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vium2145g00009	493	PRINTS	Heat shock factor (HSF) domain signature	100	123	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vium2145g00009	493	MobiDBLite	consensus disorder prediction	51	73	-	-
	Vium2145g00009	493	FunFam	Heat stress transcription factor B-4	92	190	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium2145g00009	Vium-Chr2145	72045	74650	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium2145g00009	85	321	HSF	AT5G03720	54.583	1.71e-81	257

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Vium2145g00009		HSF_DNA-bind	1.1e-29	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium2145g00009	K09419		-	gmx:100788429	558.91