Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2145g00008 ATGAAACATCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCTCAGTGCCTTCAGATGATTGAGAAAGAACTTGGCTTTACACCTGCAGTCAATGGTTCAGCTTCAGTATCTGCTACAGTCAGGAGTGATTTGCAGTCACAACGCCCACCTCATAGTATCCATGTGAATCCAAAGTATTTAGAAAGGCAGCGTCTCCAGCAGTCAAGTACGAGTAAAGGAGTTGTTGATGACATGACCGGAGCTTTATTAAAGTCAAATGAGGATTCAGAGAGGCCAAATAGAGCTTTGGGTGCTTCTCGACCATGGCTGGATCCTAGGATTAACATGCTTAATAATCAGCACACACAGAGAGATGCATTTAATGATTCTGTTTCTGAGAAGAGCATTGATGGATCATTTGGAGGCAGTCAATATGGTTCTGGCATTTCTAGTAATTTGGTCTCAGGTGCTGGAAGAACTGGAACTAAGCTCATTGATTTAGGGCAAGAAAAAACATGGTCCAAAACAGATGGTGGTGATGCAGAGACCATATCTGGGCAAAAAAATGGTTTCAGTCTCAAGCGTAGTCTTTCAAATCGTGAAGCACCAAAGTCCATAAATTTGAAAGCACATCGTCAGCCAGGCCTAAATTTAACTCAGATATGGAACAATATGATGTCAGATAACTGGAAAAATTCTGAAGAGGAGGAGTTCACGTGGGATGAGATGAACTCTGGTTTGACTGATCATGGACCTAATGTGTCTAGCAATTTGAGCACAGATTCATGGATGACAGATGATGAAAATTTGGAAGGTGAAGATCACCTGCATATTCTACACCCTTACGGGGAAAAGGTTGATAGGGAAATATCCACTGTTAAGAAACAACTGCCTGGTTTTGGTGGCCATCCACCTTCATCATGGCAATTGCAGAAGCATCACACAATTGATAAGTTGACTCTGAAGCCAGGTTACTCAGAAGGATTTGTGTCCACTATTAGTGGCTTACCAGCCAACGCAAGTTCTTTACCTGTCAAGAAGGGGAACCAATCTCTTACGTCAAAGGCAATAGTAGGAATGTCCAAAATTGTAGAGCAACAATTTGATTCTGGGGAGACCGAATCCCCTTCTGGGCAGTCACCTTCACAACGACAGTCTCCATCACTACCAGGAACAGTATACCACCCTCATTCAATGCAAAATTTGCCTGAGCAAGAAATGCCCCAGGATCACAAAACATCTCAATTTTTGGGAGGTCCAACTGGTCAGCACATTAGAGATCGCTCACCTACCCTTCATCCCGTCGTTCAGGTTGGTAACATGCGAAGAACACAGGAAAAGGACATGCAGGGCACGTTTCAACCAAAGCTTCAGTCACTGCAGCCCGACTCTGCTCAGGCTGAAGTTTTTGCTAAAACTAAGCTGCCCCAGTCTAAAGTTTCTTTAACCAAAGGAGTTTCAGAACAGTCGACCAAAAATAATTTGTCAGCTGCAGCTGTGAAGAGTGGAATCATTCCCAAGAAATCAATTACCAGTAATCTGGATCCAAGGAAGCATCTATCCAAGTCTGGGGTTCAGCTTCCTCCTTCTGGTAGGTCTTCTCCTGCCACATTAACTTCTTCAGGGTCTGCAGTGGTATCACCAGCTTTATTGGATCCTCTGCACAAAGATTCATCTTCACTGCCCAAAAAACCTCAAGGAAAGATTGGACAACCACCACAAAGGCTTAATACTCAACCACCTGCTTCCTCTAATGTGAATGCTGCAAAAAATAATGTAAACCCTATCGCAAACCTTTTAAGCTCATTGGTTGCAAAGGGTTTGATATCTGCAGAAACTGAATCGCCGACTGTGGTACCAAGCGAGGTGCTGAAGGGATCCAAAGATAAAACTGCAAACATTAGCACCAATAGTTCTTTCCCAGTTACATCAGTTTCTGATTCTGCAGCTGTCCCAGCATCATCTGCCAGAGATGAGGAAGACGCTTCTACAAAATCCTCTCTACCCTCAGCTCAATCAACTAGCACGAAAATCAGAAATCTCATTGGCTTTGATTTTAAACCTAATGTAATTCGAGAATTCCATGAACCGGTAATTAGGGAATTATTGGATGATTTCTCTCATCATTGCAAAATTTGCAGTATTAGGTTTAAACAAGAACAGCAGTATAAGAGACACTTGGAGTGGCATGCCACAAGAGAACATGATCCAATTAAAGTATCCAGAAGTTGGTATGCTAAGTCAAGTGATTGGATTGCTGGCAAGGTAGAATACTCATCTGAGCTTGAGTTTACCGACTCTGTTGTTGTACACGACAAAGAAACAGACAGCAGTCAATTGGATACGATGATTCGAGCAGATGAAAATCAGTGTTTGTGTGTACTGTGTGGCGAGCTATTTGAAGATGTGTACTGTCACGAAAGGAACGAGTGGATGTTCAAAGGGGCAGTTTACATGAACTGCTTGGATTTCAATGACGAGATGGAAAGTAGAAATGTGGGTCCCATCATTCATGCCAAATGCCTATCAGAGAATTCAATTGTCACCAATTTGGGTAATGATTAA 2544 0.4257 MKHLFGTWKGVFPPQCLQMIEKELGFTPAVNGSASVSATVRSDLQSQRPPHSIHVNPKYLERQRLQQSSTSKGVVDDMTGALLKSNEDSERPNRALGASRPWLDPRINMLNNQHTQRDAFNDSVSEKSIDGSFGGSQYGSGISSNLVSGAGRTGTKLIDLGQEKTWSKTDGGDAETISGQKNGFSLKRSLSNREAPKSINLKAHRQPGLNLTQIWNNMMSDNWKNSEEEEFTWDEMNSGLTDHGPNVSSNLSTDSWMTDDENLEGEDHLHILHPYGEKVDREISTVKKQLPGFGGHPPSSWQLQKHHTIDKLTLKPGYSEGFVSTISGLPANASSLPVKKGNQSLTSKAIVGMSKIVEQQFDSGETESPSGQSPSQRQSPSLPGTVYHPHSMQNLPEQEMPQDHKTSQFLGGPTGQHIRDRSPTLHPVVQVGNMRRTQEKDMQGTFQPKLQSLQPDSAQAEVFAKTKLPQSKVSLTKGVSEQSTKNNLSAAAVKSGIIPKKSITSNLDPRKHLSKSGVQLPPSGRSSPATLTSSGSAVVSPALLDPLHKDSSSLPKKPQGKIGQPPQRLNTQPPASSNVNAAKNNVNPIANLLSSLVAKGLISAETESPTVVPSEVLKGSKDKTANISTNSSFPVTSVSDSAAVPASSARDEEDASTKSSLPSAQSTSTKIRNLIGFDFKPNVIREFHEPVIRELLDDFSHHCKICSIRFKQEQQYKRHLEWHATREHDPIKVSRSWYAKSSDWIAGKVEYSSELEFTDSVVVHDKETDSSQLDTMIRADENQCLCVLCGELFEDVYCHERNEWMFKGAVYMNCLDFNDEMESRNVGPIIHAKCLSENSIVTNLGND 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2145g00008 847 MobiDBLite consensus disorder prediction 361 413 - -
Vium2145g00008 847 ProSitePatterns Zinc finger C2H2 type domain signature. 703 723 IPR013087 -
Vium2145g00008 847 MobiDBLite consensus disorder prediction 502 582 - -
Vium2145g00008 847 MobiDBLite consensus disorder prediction 361 426 - -
Vium2145g00008 847 MobiDBLite consensus disorder prediction 623 644 - -
Vium2145g00008 847 MobiDBLite consensus disorder prediction 519 539 - -
Vium2145g00008 847 MobiDBLite consensus disorder prediction 623 665 - -
Vium2145g00008 847 MobiDBLite consensus disorder prediction 564 582 - -
Vium2145g00008 847 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 1 838 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2145g00008 Vium-Chr2145 62239 66879 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2145g00008 675 837 C2H2 Transcription Factor Family AT4G04885 34.706 4.97e-29 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium2145g00008 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2145g00008 K14400 - gmx:100811629 1257.66