Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2145g00007 ATGAACATGGAGAGTACGCGCAGATCGTTGGATAGATCTAGAGAACTGGGTTCCAAGAAGCCTCGATTGATCGACGAACTCAGCGCTAGACAGTTACCTCAAAGACAGCAAGGGTCCGGGACAGTTACTTCCTTGGTGTCTGCAAGGGCTCGAGTAAATGACAGGGACACCGAAAGCAGCGAATCAAGTCGCGGCGGTGGGTACCAGCCTCAGCCACAGCCTCACCATGAGCTTGTGACTCAGTATAAGACTGCGCTTGCTGAACTTACTTTCAATTCCAAGCCCATAATTACAAACTTGACTATTATTGCTGGGGAGAATCAGTCTGCTGCCAAGGCAATTGCCGCCACTGTCTGTGCTAACATTCTAGAGGTTCCAAGTGATCAAAAACTGCCGTCTCTTTATCTCTTAGACAGTATTGTTAAGAACATCGGGCGAGATTATATAAAGTATTTTGCTGTCAGATTACCTGAGGTATTCTGCAAGGCTTACAGACAGGTTGATCCTATTGTCCATTCAAGTATGAAACATCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCTCAGTGCCTTCAGATGATTGAGAAAGAACTTGGCTTTACACCTGCAGTCAATGGTTCAGCTTCAGTATCTGCTACAGTCAGGAGTGATTTGCAGTCACAACGCCCACCTCATAGTATCCATGTGAATCCAAAGTATTTAGAAAGGCAGCGTCTCCAGCAGTCAAGTACGAGTAAAGGAGTTGTTGATGACATGACCGGAGCTTTATTAAAGTCAAATGAGGATTCAGAGAGGCCAAATAGAGCTTTGGGTGCTTCTCGACCATGGCTGGATCCTAGGATTAACATGCTTAATAATCAGCACACACAGAGAGATGCATTTAATGATTCTGTTTCTGAGAAGAGCATTGATGGATCATTTGGAGGCAGTCAATATGGTTCTGGCATTTCTAGTAATTTGGTCTCAGGTGCTGGAAGAACTGGAACTAAGCTCATTGATTTAGGGCAAGAAAAAACATGGTCCAAAACAGATGGTGGTGATGCAGAGACCATATCTGGGCAAAAAAATGGTTTCAGTCTCAAGCGTAGTCTTTCAAATCGTGAAGCACCAAAGTCCATAAATTTGAAAGCACATCGTCAGCCAGGCCTAAATTTAACTCAGATATGGAACAATATGATGTCAGATAACTGGAAAAATTCTGAAGAGGAGGAGTTCACGTGGGATGAGATGAACTCTGGTTTGACTGATCATGGACCTAATGTGTCTAGCAATTTGAGCACAGATTCATGGATGACAGATGATGAAAATTTGGAAGGTGAAGATCACCTGCATATTCTACACCCTTACGGGGAAAAGGTTGATAGGGAAATATCCACTGTTAAGAAACAACTGCCTGGTTTTGGTGGCCATCCACCTTCATCATGGCAATTGCAGAAGCATCACACAATTGATAAGTTGACTCTGAAGCCAGGTTACTCAGAAGGATTTGTGTCCACTATTAGTGGCTTACCAGCCAACGCAAGTTCTTTACCTGTCAAGAAGGGGAACCAATCTCTTACGTCAAAGGCAATAGTAGGAATGTCCAAAATTGTAGAGCAACAATTTGATTCTGGGGAGACCGAATCCCCTTCTGGGCAGTCACCTTCACAACGACAGTCTCCATCACTACCAGGAACAGTATACCACCCTCATTCAATGCAAAATTTGCCTGAGCAAGAAATGCCCCAGGATCACAAAACATCTCAATTTTTGGGAGGTCCAACTGGTCAGCACATTAGAGATCGCTCACCTACCCTTCATCCCGTCGTTCAGGTTGGTAACATGCGAAGAACACAGGAAAAGGACATGCAGGGCACGTTTCAACCAAAGCTTCAGTCACTGCAGCCCGACTCTGCTCAGGCTGAAGTTTTTGCTAAAACTAAGCTGCCCCAGTCTAAAGTTTCTTTAACCAAAGGAGTTTCAGAACAGTCGACCAAAAATAATTTGTCAGCTGCAGCTGTGAAGAGTGGAATCATTCCCAAGAAATCAATTACCAGTAATCTGGATCCAAGGAAGCATCTATCCAAGTCTGGGGTTCAGCTTCCTCCTTCTGGTAGGTCTTCTCCTGCCACATTAACTTCTTCAGGGTCTGCAGTGGTATCACCAGCTTTATTGGATCCTCTGCACAAAGATTCATCTTCACTGCCCAAAAAACCTCAAGGAAAGATTGGACAACCACCACAAAGGCTTAATACTCAACCACCTGCTTCCTCTAATGTGAATGCTGCAAAAAATAATGTAAACCCTATCGCAAACCTTTTAAGCTCATTGGTTGCAAAGGGTTTGATATCTGCAGAAACTGAATCGCCGACTGTGGTACCAAGCGAGGTGCTGAAGGGATCCAAAGATAAAACTGCAAACATTAGCACCAATAGTTCTTTCCCAGTTACATCAGTTTCTGATTCTGCAGCTGTCCCAGCATCATCTGCCAGAGATGAGGAAGACGCTTCTACAAAATCCTCTCTACCCTCAGCTCAATCAACTAGCACGAAAATCAGAAATCTCATTGGCTTTGATTTTAAACCTAATGTAATTCGAGAATTCCATGAACCGGTAATTAGGGAATTATTGGATGATTTCTCTCATCATTGCAAAATTTGCAGTATTAGGTTTAAACAAGAACAGCAGTATAAGAGACACTTGGAGTGGCATGCCACAAGAGAACATGATCCAATTAAAGTATCCAGAAGTTGGTATGCTAAGTCAAGTGATTGGATTGCTGGCAAGGTAGAATACTCATCTGAGCTTGAGTTTACCGACTCTGTTGTTGTACACGACAAAGAAACAGACAGCAGTCAATTGGATACGATGATTCGAGCAGATGAAAATCAGTGTTTGTGTGTACTGTGTGGCGAGCTATTTGAAGATGTGTACTGTCACGAAAGGAACGAGTGGATGTTCAAAGGGGCAGTTTACATGAACTGCTTGGATTTCAATGACGAGATGGAAAGTAGAAATGTGGGTCCCATCATTCATGCCAAATGCCTATCAGAGAATTCAATTGTCACCAATTTGGGTAATGATTAA 3066 0.4328 MNMESTRRSLDRSRELGSKKPRLIDELSARQLPQRQQGSGTVTSLVSARARVNDRDTESSESSRGGGYQPQPQPHHELVTQYKTALAELTFNSKPIITNLTIIAGENQSAAKAIAATVCANILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAVRLPEVFCKAYRQVDPIVHSSMKHLFGTWKGVFPPQCLQMIEKELGFTPAVNGSASVSATVRSDLQSQRPPHSIHVNPKYLERQRLQQSSTSKGVVDDMTGALLKSNEDSERPNRALGASRPWLDPRINMLNNQHTQRDAFNDSVSEKSIDGSFGGSQYGSGISSNLVSGAGRTGTKLIDLGQEKTWSKTDGGDAETISGQKNGFSLKRSLSNREAPKSINLKAHRQPGLNLTQIWNNMMSDNWKNSEEEEFTWDEMNSGLTDHGPNVSSNLSTDSWMTDDENLEGEDHLHILHPYGEKVDREISTVKKQLPGFGGHPPSSWQLQKHHTIDKLTLKPGYSEGFVSTISGLPANASSLPVKKGNQSLTSKAIVGMSKIVEQQFDSGETESPSGQSPSQRQSPSLPGTVYHPHSMQNLPEQEMPQDHKTSQFLGGPTGQHIRDRSPTLHPVVQVGNMRRTQEKDMQGTFQPKLQSLQPDSAQAEVFAKTKLPQSKVSLTKGVSEQSTKNNLSAAAVKSGIIPKKSITSNLDPRKHLSKSGVQLPPSGRSSPATLTSSGSAVVSPALLDPLHKDSSSLPKKPQGKIGQPPQRLNTQPPASSNVNAAKNNVNPIANLLSSLVAKGLISAETESPTVVPSEVLKGSKDKTANISTNSSFPVTSVSDSAAVPASSARDEEDASTKSSLPSAQSTSTKIRNLIGFDFKPNVIREFHEPVIRELLDDFSHHCKICSIRFKQEQQYKRHLEWHATREHDPIKVSRSWYAKSSDWIAGKVEYSSELEFTDSVVVHDKETDSSQLDTMIRADENQCLCVLCGELFEDVYCHERNEWMFKGAVYMNCLDFNDEMESRNVGPIIHAKCLSENSIVTNLGND 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2145g00007 1021 MobiDBLite consensus disorder prediction 535 600 - -
Vium2145g00007 1021 FunFam polyadenylation and cleavage factor homolog 4 71 199 - -
Vium2145g00007 1021 MobiDBLite consensus disorder prediction 1 74 - -
Vium2145g00007 1021 MobiDBLite consensus disorder prediction 797 818 - -
Vium2145g00007 1021 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 53 1012 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Vium2145g00007 1021 CDD CID_Pcf11 79 189 IPR047415 -
Vium2145g00007 1021 MobiDBLite consensus disorder prediction 797 839 - -
Vium2145g00007 1021 MobiDBLite consensus disorder prediction 1 26 - -
Vium2145g00007 1021 MobiDBLite consensus disorder prediction 693 713 - -
Vium2145g00007 1021 MobiDBLite consensus disorder prediction 738 756 - -
Vium2145g00007 1021 Pfam CID domain 83 192 IPR006569 -
Vium2145g00007 1021 ProSitePatterns Zinc finger C2H2 type domain signature. 877 897 IPR013087 -
Vium2145g00007 1021 Gene3D - 69 199 IPR008942 -
Vium2145g00007 1021 MobiDBLite consensus disorder prediction 535 587 - -
Vium2145g00007 1021 SMART 558neu5 77 199 IPR006569 -
Vium2145g00007 1021 SUPERFAMILY ENTH/VHS domain 74 202 IPR008942 -
Vium2145g00007 1021 ProSiteProfiles CID domain profile. 74 202 IPR006569 -
Vium2145g00007 1021 MobiDBLite consensus disorder prediction 30 50 - -
Vium2145g00007 1021 MobiDBLite consensus disorder prediction 676 756 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2145g00007 Vium-Chr2145 62239 68334 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2145g00007 31 414 C2H2 Transcription Factor Family AT4G04885 36.458 2.28e-55 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium2145g00007 CID 1.8e-12 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2145g00007 K14400 - gmx:100788958 1532.31