Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2145g00006 ATGAACATGGAGAGTACGCGCAGATCGTTGGATAGATCTAGAGAACTGGGTTCCAAGAAGCCTCGATTGATCGACGAACTCAGCGCTAGACAGTTACCTCAAAGACAGCAAGGGTCCGGGACAGTTACTTCCTTGGTGTCTGCAAGGGCTCGAGTAAATGACAGGGACACCGAAAGCAGCGAATCAAGTCGCGGCGGTGGGTACCAGCCTCAGCCACAGCCTCACCATGAGCTTGTGACTCAGTATAAGACTGCGCTTGCTGAACTTACTTTCAATTCCAAGCCCATAATTACAAACTTGACTATTATTGCTGGGGAGAATCAGTCTGCTGCCAAGGCAATTGCCGCCACTGTCTGTGCTAACATTCTAGAGGTTCCAAGTGATCAAAAACTGCCGTCTCTTTATCTCTTAGACAGTATTGTTAAGAACATCGGGCGAGATTATATAAAGTATTTTGCTGTCAGATTACCTGAGGTATTCTGCAAGGCTTACAGACAGGTTGATCCTATTGTCCATTCAAGTATGAAACATCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCTCAGTGCCTTCAGATGATTGAGAAAGAACTTGGCTTTACACCTGCAGTCAATGGTTCAGCTTCAGTATCTGCTACAGTCAGGAGTGATTTGCAGTCACAACGCCCACCTCATAGTATCCATGTGAATCCAAAGTATTTAGAAAGGCAGCGTCTCCAGCAGTCAAGTACGAATAATCAGCACACACAGAGAGATGCATTTAATGATTCTGTTTCTGAGAAGAGCATTGATGGATCATTTGGAGGCAGTCAATATGGTTCTGGCATTTCTAGTAATTTGGTCTCAGGTGCTGGAAGAACTGGAACTAAGCTCATTGATTTAGGGCAAGAAAAAACATGGTCCAAAACAGATGGTGGTGATGCAGAGACCATATCTGGGCAAAAAAATGGTTTCAGTCTCAAGCGTAGTCTTTCAAATCGTGAAGCACCAAAGTCCATAAATTTGAAAGCACATCGTCAGCCAGGCCTAAATTTAACTCAGATATGGAACAATATGATGTCAGATAACTGGAAAAATTCTGAAGAGGAGGAGTTCACGTGGGATGAGATGAACTCTGGTTTGACTGATCATGGACCTAATGTGTCTAGCAATTTGAGCACAGATTCATGGATGACAGATGATGAAAATTTGGAAGGTGAAGATCACCTGCATATTCTACACCCTTACGGGGAAAAGGTTGATAGGGAAATATCCACTGTTAAGAAACAACTGCCTGGTTTTGGTGGCCATCCACCTTCATCATGGCAATTGCAGAAGCATCACACAATTGATAAGTTGACTCTGAAGCCAGGTTACTCAGAAGGATTTGTGTCCACTATTAGTGGCTTACCAGCCAACGCAAGTTCTTTACCTGTCAAGAAGGGGAACCAATCTCTTACGTCAAAGGCAATAGTAGGAATGTCCAAAATTGTAGAGCAACAATTTGATTCTGGGGAGACCGAATCCCCTTCTGGGCAGTCACCTTCACAACGACAGTCTCCATCACTACCAGGAACAGTATACCACCCTCATTCAATGCAAAATTTGCCTGAGCAAGAAATGCCCCAGGATCACAAAACATCTCAATTTTTGGGAGGTCCAACTGGTCAGCACATTAGAGATCGCTCACCTACCCTTCATCCCGTCGTTCAGGTTGGTAACATGCGAAGAACACAGGAAAAGGACATGCAGGGCACGTTTCAACCAAAGCTTCAGTCACTGCAGCCCGACTCTGCTCAGGCTGAAGTTTTTGCTAAAACTAAGCTGCCCCAGTCTAAAGTTTCTTTAACCAAAGGAGTTTCAGAACAGTCGACCAAAAATAATTTGTCAGCTGCAGCTGTGAAGAGTGGAATCATTCCCAAGAAATCAATTACCAGTAATCTGGATCCAAGGAAGCATCTATCCAAGTCTGGGGTTCAGCTTCCTCCTTCTGGTAGGTCTTCTCCTGCCACATTAACTTCTTCAGGGTCTGCAGTGGTATCACCAGCTTTATTGGATCCTCTGCACAAAGATTCATCTTCACTGCCCAAAAAACCTCAAGGAAAGATTGGACAACCACCACAAAGGCTTAATACTCAACCACCTGCTTCCTCTAATGTGAATGCTGCAAAAAATAATGTAAACCCTATCGCAAACCTTTTAAGCTCATTGGTTGCAAAGGGTTTGATATCTGCAGAAACTGAATCGCCGACTGTGGTACCAAGCGAGGTGCTGAAGGGATCCAAAGATAAAACTGCAAACATTAGCACCAATAGTTCTTTCCCAGTTACATCAGTTTCTGATTCTGCAGCTGTCCCAGCATCATCTGCCAGAGATGAGGAAGACGCTTCTACAAAATCCTCTCTACCCTCAGCTCAATCAACTAGCACGAAAATCAGAAATCTCATTGGCTTTGATTTTAAACCTAATGTAATTCGAGAATTCCATGAACCGGTAATTAGGGAATTATTGGATGATTTCTCTCATCATTGCAAAATTTGCAGTATTAGGTTTAAACAAGAACAGCAGTATAAGAGACACTTGGAGTGGCATGCCACAAGAGAACATGATCCAATTAAAGTATCCAGAAGTTGGTATGCTAAGTCAAGTGATTGGATTGCTGGCAAGGTAGAATACTCATCTGAGCTTGAGTTTACCGACTCTGTTGTTGTACACGACAAAGAAACAGACAGCAGTCAATTGGATACGATGATTCGAGCAGATGAAAATCAGTGTTTGTGTGTACTGTGTGGCGAGCTATTTGAAGATGTGTACTGTCACGAAAGGAACGAGTGGATGTTCAAAGGGGCAGTTTACATGAACTGCTTGGATTTCAATGACGAGATGGAAAGTAGAAATGTGGGTCCCATCATTCATGCCAAATGCCTATCAGAGAATTCAATTGTCACCAATTTGGGTAATGATTAA 2946 0.4328 MNMESTRRSLDRSRELGSKKPRLIDELSARQLPQRQQGSGTVTSLVSARARVNDRDTESSESSRGGGYQPQPQPHHELVTQYKTALAELTFNSKPIITNLTIIAGENQSAAKAIAATVCANILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAVRLPEVFCKAYRQVDPIVHSSMKHLFGTWKGVFPPQCLQMIEKELGFTPAVNGSASVSATVRSDLQSQRPPHSIHVNPKYLERQRLQQSSTNNQHTQRDAFNDSVSEKSIDGSFGGSQYGSGISSNLVSGAGRTGTKLIDLGQEKTWSKTDGGDAETISGQKNGFSLKRSLSNREAPKSINLKAHRQPGLNLTQIWNNMMSDNWKNSEEEEFTWDEMNSGLTDHGPNVSSNLSTDSWMTDDENLEGEDHLHILHPYGEKVDREISTVKKQLPGFGGHPPSSWQLQKHHTIDKLTLKPGYSEGFVSTISGLPANASSLPVKKGNQSLTSKAIVGMSKIVEQQFDSGETESPSGQSPSQRQSPSLPGTVYHPHSMQNLPEQEMPQDHKTSQFLGGPTGQHIRDRSPTLHPVVQVGNMRRTQEKDMQGTFQPKLQSLQPDSAQAEVFAKTKLPQSKVSLTKGVSEQSTKNNLSAAAVKSGIIPKKSITSNLDPRKHLSKSGVQLPPSGRSSPATLTSSGSAVVSPALLDPLHKDSSSLPKKPQGKIGQPPQRLNTQPPASSNVNAAKNNVNPIANLLSSLVAKGLISAETESPTVVPSEVLKGSKDKTANISTNSSFPVTSVSDSAAVPASSARDEEDASTKSSLPSAQSTSTKIRNLIGFDFKPNVIREFHEPVIRELLDDFSHHCKICSIRFKQEQQYKRHLEWHATREHDPIKVSRSWYAKSSDWIAGKVEYSSELEFTDSVVVHDKETDSSQLDTMIRADENQCLCVLCGELFEDVYCHERNEWMFKGAVYMNCLDFNDEMESRNVGPIIHAKCLSENSIVTNLGND 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2145g00006 981 MobiDBLite consensus disorder prediction 1 74 - -
Vium2145g00006 981 MobiDBLite consensus disorder prediction 636 716 - -
Vium2145g00006 981 MobiDBLite consensus disorder prediction 757 778 - -
Vium2145g00006 981 MobiDBLite consensus disorder prediction 495 560 - -
Vium2145g00006 981 ProSitePatterns Zinc finger C2H2 type domain signature. 837 857 IPR013087 -
Vium2145g00006 981 FunFam polyadenylation and cleavage factor homolog 4 71 199 - -
Vium2145g00006 981 MobiDBLite consensus disorder prediction 653 673 - -
Vium2145g00006 981 SUPERFAMILY ENTH/VHS domain 74 202 IPR008942 -
Vium2145g00006 981 CDD CID_Pcf11 79 189 IPR047415 -
Vium2145g00006 981 Pfam CID domain 83 192 IPR006569 -
Vium2145g00006 981 MobiDBLite consensus disorder prediction 1 26 - -
Vium2145g00006 981 MobiDBLite consensus disorder prediction 757 799 - -
Vium2145g00006 981 MobiDBLite consensus disorder prediction 698 716 - -
Vium2145g00006 981 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 53 972 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Vium2145g00006 981 SMART 558neu5 77 199 IPR006569 -
Vium2145g00006 981 MobiDBLite consensus disorder prediction 495 547 - -
Vium2145g00006 981 ProSiteProfiles CID domain profile. 74 202 IPR006569 -
Vium2145g00006 981 Gene3D - 69 199 IPR008942 -
Vium2145g00006 981 MobiDBLite consensus disorder prediction 30 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2145g00006 Vium-Chr2145 62239 68336 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2145g00006 809 971 C2H2 Transcription Factor Family AT4G04885 34.706 4.69e-29 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium2145g00006 CID 1.7e-12 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2145g00006 K14400 - gmx:100788958 1451.03