Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2145g00001 ATGGAAATGGAGGACCATCATCATCATCATCATCAACACCATGAACAGCAGCAGCAGCAGCAGCAGCAGTATGCCATCACTGATCTCAGACAACTCATGAACGGCCCGAGGTCCACCCATTTCCCCTCCATGCCGCCGCAGCCCAAGGCGGAGCTGTTCCCCGGCGGCCACCCCAACCTGGCCGCCTCGCAGCACTTCGAGATGATGATGTTTGGTCGTCAAGTGGCCGACATAATGCCTCGGTGTCTTCATGACTTTGCATCTACCGATTCCGCCACGAATAATAACAACACGAGCATCGCTGCTGCCACTCCCACCACCACCACTAGTGCCTCCACTCCTCCGCTTAGTTGCTTAGAGGGTGAGACCGCAGGATGCATCGGTGGAGATGCCTCCACTGGAAGATGGCCCAGACAAGAGACACTCACTCTTCTTGAGATCAGATCTCGCCTCGACTCTAAATTCAAAGAGGCTAATCAAAAGGGTCCCCTATGGGATGAAGTTTCTAGGATCATGTCTGAAGAACATGGATATCAAAGGAGCGGGAAGAAGTGCCGGGAGAAGTTTGAGAACCTCTACAAATATTACAAGAAGACAAAGGAGGGAAAAGCTGGAAGACAGGATGGGAAACATTACAGGTTCTTTCGTCAACTTGAAGCCTTATATGGTGAAAACAGTAACCAAACCTCGGTACCAGAAACCAATTTTGGTAGTGGCAGCCTTCGTTTCCACTCAAACAGCCACAACCCTTCTCAAACAAATCAAGAAATGTTTCACTCCCAGAAGCATTGCGATAGCCTAAGTCTCACCAACACCACTGATTTGGACACGTCATCATCGGATGACAACGATCAGAATAGCACTGGGGGACTCAAGGACAACGACTCCACGGAGAAGAGGAGAAAGAGGTTGAGCGGAAGAAGCTGGAAGGTGAAGATAAAAGACTTCATTGACTCACAGATGAGGAAGCTGGTGGACAAGCAAGAGGAGTGGTTGGAAAAACTCACGAAGACACTGGAACAGAAAGAAAAGGAGAGGGTGCTAAGAGAAGAAGAGTGGAGGAGACAAGAAGCTGTAAGGTTGGAGAGGGAACACAAATTTTGGGCTAAAGAGAGAGCATGGATTGAAGCCAGGGATGCTGCTTTAATGGAGGCTTTACAAAAACTAACAGGAAATGAGATGATAAAGAGTACTCAATCTCCTGAGGGTGTAATGGTAACTGGAATTCATAACCACAGTGAAAACCTGAATGAAGATGGGAGTGAAATACTAAATAGTACCACTGCCAGAGGTGCTGAAAGCTGGCCAGAATCTGAGATTACTAGGCTTCAGCAGTTGAGAGCTGAGATGGAGACAAGGTATATACAAAGTGGGTGTTCAGAAGAGTTTATGTGGGAGGAAATAGCAACCAAAATGGCTTGTTTTGGTTACGAAAGGAGTGCTTTAGTGTTCAAAGAGAAATGGGAAAGTACCAGCAACTACGCAAGGAATGCTAAAGATGGAAACAAGAAGCGCAAGGAAGACTCTAGAGGTTGTTTCTACTTCGATAACAGCGAACAGTCTTCCCTTTATAACCAAGGAGGAGCCTATTGTGATATTAATGATCAAAGGCACGAGAGGAGGCTGCAAAATGATGGTTCTTCGCCTTCAAATTCAAATGTTGGAAATGCAGTTGCTGGTGATCACTGCTTTCCCTTCTTGATGACTGAGAGTGCAAATTTGTGGGAGAACTATAGCTTAAAGGTTAGTAAAGCAAGTCAAAACCAGTGA 1770 0.4661 MEMEDHHHHHHQHHEQQQQQQQQYAITDLRQLMNGPRSTHFPSMPPQPKAELFPGGHPNLAASQHFEMMMFGRQVADIMPRCLHDFASTDSATNNNNTSIAAATPTTTTSASTPPLSCLEGETAGCIGGDASTGRWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRIMSEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKHYRFFRQLEALYGENSNQTSVPETNFGSGSLRFHSNSHNPSQTNQEMFHSQKHCDSLSLTNTTDLDTSSSDDNDQNSTGGLKDNDSTEKRRKRLSGRSWKVKIKDFIDSQMRKLVDKQEEWLEKLTKTLEQKEKERVLREEEWRRQEAVRLEREHKFWAKERAWIEARDAALMEALQKLTGNEMIKSTQSPEGVMVTGIHNHSENLNEDGSEILNSTTARGAESWPESEITRLQQLRAEMETRYIQSGCSEEFMWEEIATKMACFGYERSALVFKEKWESTSNYARNAKDGNKKRKEDSRGCFYFDNSEQSSLYNQGGAYCDINDQRHERRLQNDGSSPSNSNVGNAVAGDHCFPFLMTESANLWENYSLKVSKASQNQ 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2145g00001 589 ProSiteProfiles Myb-like domain profile. 128 193 IPR001005 -
Vium2145g00001 589 MobiDBLite consensus disorder prediction 34 58 - -
Vium2145g00001 589 Pfam Myb/SANT-like DNA-binding domain 135 221 IPR044822 -
Vium2145g00001 589 Pfam Myb/SANT-like DNA-binding domain 434 517 IPR044822 -
Vium2145g00001 589 MobiDBLite consensus disorder prediction 1 22 - -
Vium2145g00001 589 Coils Coil 325 352 - -
Vium2145g00001 589 PANTHER FI21293P1 79 546 - -
Vium2145g00001 589 FunFam trihelix transcription factor PTL-like 136 198 - -
Vium2145g00001 589 CDD GT1 435 499 - -
Vium2145g00001 589 Gene3D - 136 198 - -
Vium2145g00001 589 Gene3D - 435 497 - -
Vium2145g00001 589 MobiDBLite consensus disorder prediction 225 304 - -
Vium2145g00001 589 FunFam Trihelix transcription factor GT-2 435 497 - -
Vium2145g00001 589 MobiDBLite consensus disorder prediction 225 292 - -
Vium2145g00001 589 MobiDBLite consensus disorder prediction 90 115 - -
Vium2145g00001 589 CDD GT1 135 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2145g00001 Vium-Chr2145 15494 18809 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2145g00001 18 584 Trihelix Transcription Factor Family AT5G03680 45.559 5.50e-146 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vium2145g00001 Myb_DNA-bind_4 7.5e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2145g00001 - - gmx:100813245 946.421