Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2142g00005 ATGGCTCAAAACCAAGCATCTTCTTCTACTTCTATTGTGTCAAAATACCGTTACGATGTTTTTCTTAGTTTTTGTGGAGATGATACCCGTTTTGGTTTCACTGGTAATCTGTACAGTGCTTTGAGTGAAAGGGGAATCTTGACCTTCATCGATGATGAAGCTCTCAGAAAGGGAGAAGAGATCACACCTTCTCTTCGCAAGGCAATCCAAGAATCCAGGATATCCATCATTGTTTTCTCCCAAAACTATGCTTTCTCAACATTTTGTTTGGACGAACTTCTCCATATCATTGAGTGCCGAACAAAACAGAACATGCTGATTTTTCCAGTGTTTTATGACGTAGAGCCATCACAAGTGCGAAATCAAACAGGGAGTTACCAAGAAGCATTTGCAAAGCTTGGTGAAAGATTCAAAGATGACATTCAGAAGCTTCAACAATGGAGGCGGGCTTTGTATGATGCTGCTAATTTGTCTGGTTTGCATTTCAAATCTGGTGAAAAGTATGAGTCTAATATAGTGAAAAAGATCATAAAAGAGATCTCCGATAGTTTTAAGCGGTCTCCCTTACATATTGCTGAGTATCCTGTTGGTTTGAAAGATCGGATGCAACAGATACAAGAACTCATGGGTGGTGAGTTTGATAAGAAAGTGACCATGCTTGGGATTCATGGAATGGGAGGAATAGGAAAATCAACTCTTGCACGTGCGATGTACAACTTGATGGAAGATCAATTTGAAGCTTCGCAATTTCTTGCTAATGTCAGGGAAAAAGGTCTGGTGCATATCCAAGAGACAATGCTGTCTGAGTTGGTGGGGGAAAGAAATATCAAGTTAGGAGATGTGCATCGAGGAATTCCAATACTACAACACAGACTTTGTGGGAAAAAAGTCCTCCTTGTGCTTGATGATATTAGCAAAAAAGAACAATTGCAAGCAACTGTTGGAGGACTTGATTGGTTTGGCCCTGGTAGCATCGTCATCATAACAACAAGGGATAAGCATTTGTTAGATGTTCATGGAGTTCAAAAACAGTACATGGTTGGTGAAATTAACCATATGGAAGCCCTTGAATTGTATAAGTGGAATGCTTTCAAGAACAAAGAAGTTGATCCATGTTACAAGGAAGTCATAAAGCGTGCAGTGTGGTATGCCGATGGCCTTCCATTGGCTTTGGAAACGATAGGCTCGCACTTTGAAAAGTATGAGTCTAATATAGTGAAAAAGATCATAAAAGAGATCTCCGATAATTTTAAGCGGTCTCCCTTACATATTGCTGAGTATCCTGTTGGTTTGAAAGATCGGATGCAACAGATACAAGAACTCATGGGTGGTGAGTTTGATAAGAAAGTGACCATGCTTGGGATTCATGGAATGGGAGGAATAGGAAAATCAACTCTTGCACGTGCGATGTACAACTTGATGGAAGATCAATTTGAAGCTTCGCAATTTCTTGCTAATGTCAGGGAAAAAGGTCTGGTGCATATCCAAGAGACAATGCTGTCTGAGTTGGTGGGGGAAAGAAATATCAAGTTAGGAGATGTGCATCGAGGAATTCCAATACTACAACACAGACTTTGTGGGAAAAAAGTCCTCCTTGTGCTTGATGATATTAGCAAAAAAGAACAATTGCAAGCAACTGATGGAGGACTTGATTGGTTTGGCCCTGGTAGCATCGTCATAATAACAACAAGGGATAAGCATTTGTTAGATGTTCATGGAGTTCAAAAACAGTACATGGTTGGTGAAATTAACCATATGGAAGCCCTTAAATTGTATAAGTGGAATGCTTTCAAGAACAAAGAAGTTGATCCATGTTACAAGGAAGTCATAAAGCGTGCAGTGTGGTATGCCGATGGCCTTCCATTGGCTTTGGAAACGATAGGCTCGCACTTGTTTGGCAAAACCTTGGATGAATGGGAATCTGCATTAGAAACTTATGAGAGAATTCCAAATAGAGGTGTTCAGGATGTTCTTAAAGTTAGCTATGATAGTTTGGAGGTTTCTCACCAAGAAATGTTTCTTGACATAGCTTGCTTCTTTAGAGGACGGTCTCGTGGATACGTTACAAATACGCTTGAGGCAAGAGGTGGTGTTCCTCCACATTTTGGTCTGAAAGTGCTGGAAGAAAGATCTCTCATTAAAATTCGGAAATGTCCACATGATGCTGTGGAAATGCATGACATGATTCGGTGTATGGGAAAAGAAATAGCTAGACAACAATCAACTCTGCGTCGCAATGGTCCTAGGTTGTGGATTTACGAGGACATTGTTTGCGTGTTGGAGAAAAACAAGGAAAATTATAAAATTGAAGCGATGATGTTGGAGATGCCAGAACACCAAGAAGAAATGCAATGCAATTTAGAGTTTGGAAAAATACAAAGCTTACGGATGCTTCTTGTAGAAAAGAATGTTGGCTTTCTTAGAATCCCTGCTACTCTGCCAAACAGTTTGAGAGTGCTGGAATGGCGTGGATATCCTGAACCTTCTTTACCGAGCAATTTTCATTTCAAGAATCTTGTCATACTCAACTTGTCACACAGTTACTTTAGATGGGACAAACCACTACAGAATTCAAAGGTTTTGAGACACTTGATTCTCAGAGGTTGTAAGAATATTAGACGAATACCTGACATCTCTGGTTTCCCCAATTTGACAATACTTAGTGTTGCTGAATGCACAAATCTGTCTGAGATTGATGATTCAGTTGGATCTTTACTTCATCTTAAAGTGTTTTGTGCTGGAGGATGTACCAAGCTCAAAATTGGTCCAAGTCGCATAGAGTTGAAATCTTTGGAGCATCTGTGCTTTGGGGGCTGCAGCAGTCTTGTTATGTTTCCAGAAGTATTGGCACCAATGCACAAACTAAAACAAGTTTACTTGGGAGGAACTGGCATAAGAAATCTGCCACTGTCAATGCAAGATCTTAGGGGTATTGAAGTATTTTCCCTGGGGAAAGGCCAAATGCTTGAAATTAATGAATCGTCCAATTTCTTTCAAAACCTGCCAATGTTCTTTCCTAATTTAAAAACATTATATTTACAAAACTTAGACATTACAATCCTTCCTGCCAGCATTGAAGAATGTCACTCTTTGAAATATCTGCACGTCACCAACTGCAAGAAGCTTCAAGAAATTAGAGGACTTCCATTGAATATTTATCAGTTCTACGCAGCAAACTGTTCTGTTGAAGTCAACTCTTTAATATTAAAACTCAGGCAGGCCATTGATTCTGCTGCAATGAGAATCTGTTTACTTCCCGGTCGGGAAATCCCAGAATTGTTTGACCACTCTAGCGGGGGAAATTCTGTAAGATTTTGGTTTCGTAAAGAATTGCCCTCTCTCGCTGTGTGTACTATTATTGGAGCCTCCAATAATGTCAAGCCTCCTTTCGCTGCCAGGATTGATTACTATGTTAGAGTAAAAAATAATTTTGAGTGTGTTCGTTATATCGTTTTTATTAATATAGAATGGATAACTGAGGATAGTCACATAATTATAGTCAATATTCAAAATGATTTTCACCGTCAATTGAATTCGGATGTTCAGAAAGCGCTTCTGACGAATAAGTGGATTCCTGGAATAATAAGGTTGACGATAAATCCAGAAAGTGATTCAAGTAAGTTGGGAGAAATCAGAACGACAGGAGTTTATGTACATCGAAAATTGAGTAGAATGGAGGATGTTCGGTTCTCAAATCCTCGTAGAAGATAG 3711 0.3945 MAQNQASSSTSIVSKYRYDVFLSFCGDDTRFGFTGNLYSALSERGILTFIDDEALRKGEEITPSLRKAIQESRISIIVFSQNYAFSTFCLDELLHIIECRTKQNMLIFPVFYDVEPSQVRNQTGSYQEAFAKLGERFKDDIQKLQQWRRALYDAANLSGLHFKSGEKYESNIVKKIIKEISDSFKRSPLHIAEYPVGLKDRMQQIQELMGGEFDKKVTMLGIHGMGGIGKSTLARAMYNLMEDQFEASQFLANVREKGLVHIQETMLSELVGERNIKLGDVHRGIPILQHRLCGKKVLLVLDDISKKEQLQATVGGLDWFGPGSIVIITTRDKHLLDVHGVQKQYMVGEINHMEALELYKWNAFKNKEVDPCYKEVIKRAVWYADGLPLALETIGSHFEKYESNIVKKIIKEISDNFKRSPLHIAEYPVGLKDRMQQIQELMGGEFDKKVTMLGIHGMGGIGKSTLARAMYNLMEDQFEASQFLANVREKGLVHIQETMLSELVGERNIKLGDVHRGIPILQHRLCGKKVLLVLDDISKKEQLQATDGGLDWFGPGSIVIITTRDKHLLDVHGVQKQYMVGEINHMEALKLYKWNAFKNKEVDPCYKEVIKRAVWYADGLPLALETIGSHLFGKTLDEWESALETYERIPNRGVQDVLKVSYDSLEVSHQEMFLDIACFFRGRSRGYVTNTLEARGGVPPHFGLKVLEERSLIKIRKCPHDAVEMHDMIRCMGKEIARQQSTLRRNGPRLWIYEDIVCVLEKNKENYKIEAMMLEMPEHQEEMQCNLEFGKIQSLRMLLVEKNVGFLRIPATLPNSLRVLEWRGYPEPSLPSNFHFKNLVILNLSHSYFRWDKPLQNSKVLRHLILRGCKNIRRIPDISGFPNLTILSVAECTNLSEIDDSVGSLLHLKVFCAGGCTKLKIGPSRIELKSLEHLCFGGCSSLVMFPEVLAPMHKLKQVYLGGTGIRNLPLSMQDLRGIEVFSLGKGQMLEINESSNFFQNLPMFFPNLKTLYLQNLDITILPASIEECHSLKYLHVTNCKKLQEIRGLPLNIYQFYAANCSVEVNSLILKLRQAIDSAAMRICLLPGREIPELFDHSSGGNSVRFWFRKELPSLAVCTIIGASNNVKPPFAARIDYYVRVKNNFECVRYIVFINIEWITEDSHIIIVNIQNDFHRQLNSDVQKALLTNKWIPGIIRLTINPESDSSKLGEIRTTGVYVHRKLSRMEDVRFSNPRRR 1236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2142g00005 1236 Gene3D Ribonuclease Inhibitor 779 925 IPR032675 -
Vium2142g00005 1236 Gene3D Ribonuclease Inhibitor 926 1061 IPR032675 -
Vium2142g00005 1236 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 405 1048 IPR044974 GO:0006952
Vium2142g00005 1236 SMART AAA_5 216 351 IPR003593 GO:0016887
Vium2142g00005 1236 SMART AAA_5 449 584 IPR003593 GO:0016887
Vium2142g00005 1236 SUPERFAMILY L domain-like 779 1064 - -
Vium2142g00005 1236 Pfam TIR domain 18 183 IPR000157 GO:0007165
Vium2142g00005 1236 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 159 IPR035897 -
Vium2142g00005 1236 Gene3D - 583 666 IPR042197 -
Vium2142g00005 1236 ProSiteProfiles TIR domain profile. 16 184 IPR000157 GO:0007165
Vium2142g00005 1236 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 419 676 IPR027417 -
Vium2142g00005 1236 SMART till_3 17 157 IPR000157 GO:0007165
Vium2142g00005 1236 SUPERFAMILY "Winged helix" DNA-binding domain 654 760 IPR036390 -
Vium2142g00005 1236 Gene3D - 409 579 IPR027417 -
Vium2142g00005 1236 PRINTS Disease resistance protein signature 219 234 - -
Vium2142g00005 1236 PRINTS Disease resistance protein signature 926 942 - -
Vium2142g00005 1236 PRINTS Disease resistance protein signature 617 631 - -
Vium2142g00005 1236 PRINTS Disease resistance protein signature 291 305 - -
Vium2142g00005 1236 Gene3D - 189 347 IPR027417 -
Vium2142g00005 1236 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 186 - -
Vium2142g00005 1236 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 407 IPR027417 -
Vium2142g00005 1236 Gene3D - 12 188 IPR035897 -
Vium2142g00005 1236 Pfam NB-ARC domain 435 664 IPR002182 GO:0043531
Vium2142g00005 1236 Pfam NB-ARC domain 202 417 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2142g00005 Vium-Chr2142 40434 49584 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2142g00005 196 395 WRKY Transcription Factor Family AT5G45050 33.659 8.75e-26 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2142g00005 - - vum:124829269 2485.68