Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2142g00003 ATGGCTCAAAACCAAGCATCTTCTTCTACTTCTATTGTGTCAAAATACCGTTACGATGTTTTTCTTAGTTTTTGTGGAGATGATACCCGTTTTGGTTTCACTGGTAATCTGTACAGTGCTTTGAGTGAAAGGGGAATCTTGACCTTCATCGATGATGAAGCTCTCAGAAAGGGAGAAGAGATCACACCTTCTCTTCGCAAGGCAATCCAAGAATCCAGGATATCCATCATTGTTTTCTCCCAAAACTATGCTTTCTCAACATTTTGTTTGGACGAACTTCTCCATATCATTGAGTGCCGAACAAAACAGAACATGCTGATTTTTCCAGTGTTTTATGACGTAGAGCCATCACAAGTGCGAAATCAAACAGGGAGTTACCAAGAAGCATTTGCAAAGCTTGGTGAAAGATTCAAAGATGACATTCAGAAGCTTCAACAATGGAGGCGGGCTTTGTATGATGCTGCTAATTTGTCTGGTTTGCATTTCAAATCTGGTGAAAAGTATGAGTCTAATATAGTGAAAAAGATCATAAAAGAGATCTCCGATAGTTTTAAGCGGTCTCCCTTACATATTGCTGAGTATCCTGTTGGTTTGAAAGATCGGATGCAACAGATACAAGAACTCATGGGTGGTGAGTTTGATAAGAAAGTGACCATGCTTGGGATTCATGGAATGGGAGGAATAGGAAAATCAACTCTTGCACGTGCGATGTACAACTTGATGGAAGATCAATTTGAAGCTTCGCAATTTCTTGCTAATGTCAGGGAAAAAGGTCTGGTGCATATCCAAGAGACAATGCTGTCTGAGTTGGTGGGGGAAAGAAATATCAAGTTAGGAGATGTGCATCGAGGAATTCCAATACTACAACACAGACTTTGTGGGAAAAAAGTCCTCCTTGTGCTTGATGATATTAGCAAAAAAGAACAATTGCAAGCAACTGTTGGAGGACTTGATTGGTTTGGCCCTGGTAGCATCGTCATCATAACAACAAGGGATAAGCATTTGTTAGATGTTCATGGAGTTCAAAAACAGTACATGGTTGGTGAAATTAACCATATGGAAGCCCTTGAATTGTATAAGTGGAATGCTTTCAAGAACAAAGAAGTTGATCCATGTTACAAGGAAGTCATAAAGCGTGCAGTGTGGTATGCCGATGGCCTTCCATTGGCTTTGGAAACGATAGGCTCGCACTTGTTTGGCAAAANCTATGCTCTACAGCACACCTCTCAAACCCGTGGCTGA 1242 0.4074 MAQNQASSSTSIVSKYRYDVFLSFCGDDTRFGFTGNLYSALSERGILTFIDDEALRKGEEITPSLRKAIQESRISIIVFSQNYAFSTFCLDELLHIIECRTKQNMLIFPVFYDVEPSQVRNQTGSYQEAFAKLGERFKDDIQKLQQWRRALYDAANLSGLHFKSGEKYESNIVKKIIKEISDSFKRSPLHIAEYPVGLKDRMQQIQELMGGEFDKKVTMLGIHGMGGIGKSTLARAMYNLMEDQFEASQFLANVREKGLVHIQETMLSELVGERNIKLGDVHRGIPILQHRLCGKKVLLVLDDISKKEQLQATVGGLDWFGPGSIVIITTRDKHLLDVHGVQKQYMVGEINHMEALELYKWNAFKNKEVDPCYKEVIKRAVWYADGLPLALETIGSHLFGKXYALQHTSQTRG 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2142g00003 413 Gene3D - 12 188 IPR035897 -
Vium2142g00003 413 Gene3D - 189 347 IPR027417 -
Vium2142g00003 413 Pfam NB-ARC domain 202 400 IPR002182 GO:0043531
Vium2142g00003 413 Pfam TIR domain 18 183 IPR000157 GO:0007165
Vium2142g00003 413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 401 IPR027417 -
Vium2142g00003 413 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 159 IPR035897 -
Vium2142g00003 413 Gene3D - 350 411 IPR042197 -
Vium2142g00003 413 ProSiteProfiles TIR domain profile. 16 184 IPR000157 GO:0007165
Vium2142g00003 413 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 401 IPR044974 GO:0006952
Vium2142g00003 413 PRINTS Disease resistance protein signature 384 398 - -
Vium2142g00003 413 PRINTS Disease resistance protein signature 219 234 - -
Vium2142g00003 413 PRINTS Disease resistance protein signature 291 305 - -
Vium2142g00003 413 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 186 - -
Vium2142g00003 413 SMART till_3 17 157 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2142g00003 Vium-Chr2142 33731 35076 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2142g00003 196 401 WRKY Transcription Factor Family AT5G45050 34.123 2.42e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2142g00003 - - vum:124829269 793.882