Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2137g00002 ATGGATCGAGGGGACCAAATGTTATCTGGCTCTGCATCTTACTATATGCAGAGAGGAATACCTGGTGCTGGAACTCAATCTGAACTGCACAACTCGCCTAATATTAGATCATTGTCTAATCCTAATTTACCATTTCAATCAAGCATTGGTGGTGGTGGTACCATTGGATCCACATTACCGTTGGAGTCTACAGGAATTTCATCTCCATGTGTCAATGTGAGTGCTCCTTCTGGTGCTGTGCCAGGGGAATCTGCCAAAAGGAAGAGAGGAAGGCCTCGAAAATACGGGCCGGACGGAACTGTGTCGTTGGCATTGACTCCAACGCCAGCAAGTCATCCTGGAGCCCTGGCACAAGGCCAGAAACGAGGTAGAGGGCGCCCACCAGGATCAGGGAAGAAACAGCAGTTGGCTTCTCTTGGTGAACTGATGTCTGGTTCAGCTGGGATGGGTTTCACTCCTCATATCATTACCATAGCAGTTGGAGAGGACGTTGCCACAAAAATCATGGCATTTTCTCAGCAGGGTCCAAGAGCTATATGTATTTTGTCAGCCAATGGTGCTGTGTCTACTGTGACTCTTCGCCAGCCTTCAACATCAGGTGGCACAGTCACATATGAGGGGCGTTTTGAGATATTGTGCCTGTCAGGCTCTTACTTGGTTGCCGATGGTGGTGGCTCCCGCAATCGAACTGGTGGATTAAGTGTTTCCCTTGCAAGTCCTGATGGCCGTGTCCTTGGCGGAGGAGTTGGTGGAGTGCTTATTGCTGCAAGTCCAGTTCAGGTGATAGTTGGAAGCTTTACATGGGGTGGATCAAAGACAAAGATCAAGAAAAAAGAACCTTCAGAAGTGGCAGAAGTTGCTATAGAGACTGATCATCAGACAGTTCATAATCCCGTCGCAATGAATAGCCTCTCGCCAAATCAAAATCTTACTCCAACCTCATCTTTAAGTCCGTGGCCAGCATCACGATCATTGGATATGCGCAACTCTCATATTGACATTGATTTAATGCGCGGGTGA 1020 0.4804 MDRGDQMLSGSASYYMQRGIPGAGTQSELHNSPNIRSLSNPNLPFQSSIGGGGTIGSTLPLESTGISSPCVNVSAPSGAVPGESAKRKRGRPRKYGPDGTVSLALTPTPASHPGALAQGQKRGRGRPPGSGKKQQLASLGELMSGSAGMGFTPHIITIAVGEDVATKIMAFSQQGPRAICILSANGAVSTVTLRQPSTSGGTVTYEGRFEILCLSGSYLVADGGGSRNRTGGLSVSLASPDGRVLGGGVGGVLIAASPVQVIVGSFTWGGSKTKIKKKEPSEVAEVAIETDHQTVHNPVAMNSLSPNQNLTPTSSLSPWPASRSLDMRNSHIDIDLMRG 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2137g00002 339 Gene3D - 153 296 - -
Vium2137g00002 339 MobiDBLite consensus disorder prediction 300 322 - -
Vium2137g00002 339 FunFam AT-hook motif nuclear-localized protein 1-like 153 284 - -
Vium2137g00002 339 MobiDBLite consensus disorder prediction 70 136 - -
Vium2137g00002 339 ProSiteProfiles PPC domain profile profile. 147 289 IPR005175 -
Vium2137g00002 339 SMART AT_hook_2 121 133 IPR017956 GO:0003677
Vium2137g00002 339 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Vium2137g00002 339 MobiDBLite consensus disorder prediction 24 56 - -
Vium2137g00002 339 SUPERFAMILY AF0104/ALDC/Ptd012-like 151 269 - -
Vium2137g00002 339 CDD DUF296 152 266 IPR005175 -
Vium2137g00002 339 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 65 314 IPR039605 GO:0003680
Vium2137g00002 339 Pfam Plants and Prokaryotes Conserved (PCC) domain 153 267 IPR005175 -
Vium2137g00002 339 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2137g00002 Vium-Chr2137 14868 20873 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2137g00002 1 339 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 50.833 9.71e-89 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2137g00002 - - gmx:100799791 581.637