Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2136g00021 ATGGGTTGCATTTACTCGCGAGTTTGTATAGGTGACAACTGCAGAGGTTCAAGCATCAACGGAGACCCCATAGCCAGAACCACCGACGTTGGTGAAGTGGCTAATTTCTCGCCCACCTCTTCCGACGTTGAAGAAGGTGAAATCAGAGACCAGCTTAACCAATTGAGCATCACGAGGGACTCCGAAGCGGGAATCCGGAGATTAGCTAGGGTTTCGGCGCAGTTCCTGCCGCCGGACGGTTCACGAATCGTTAAAGTGCCTTCTGAGAACTTCGAATTGCGATACTCGTTTTTGTCTCAGAGAGGTTACTATCCCGATGCACTTGATAAAGCGAACCAGGATAGCTTCTGCATCCACACGCCTTTCGGTACGAGTCCTAATGACCACTTTTTTGGTGTCTTCGACGGCCATGGTGAGTTTGGAGCTCAGTGCTCGCAGTTCGTGAAGCGGAAATTGTGTGAGAATTTGCTCAGGAATTCTAAATTCCGTGGTGATCCTGTTGAGGCTTGTCATGCGGCGTTTTTGGCGACGAATTCGCAGCTGCATGCTGATGTTTTGGATGACAGCATGAGCGGGACGACGGCGATCACGGTGCTGGTGAGGGGCAGGACGATATTTGTGGCGAATTCCGGCGATTCGAGGGCGGTGATCGCGGAGAGGAGAGGGAAGGAAATTGTGGCCGTTGATTTGTCTATTGATCAGACGCCGTTTAGGAGTGATGAGCTTGAGAGGGTGAAACTCTGTGGGGCGAGGGTTCTTACTTTGGATCAGATTGAGGGGTTGAAGGACCCTGATGTGCAGTGTTGGGGCACTGAGGAGGGTGATGATGGTGACCCTCCGAGGTTGTGGGTGCCCAATGGGATGTACCCGGGGACGGCTTTCACAAGGAGTATTGGTGATTCTATTGCGGAGACTGTTGGGGTTGTGGCGAATCCTGAGATTGTTGTGTTTGAGCTCACGCAGGATCACCCTTTCTTTGTGCTTGCTAGTGATGGGGTGTTTGAGTTTCTCTCTAGCCAGAGTGTGGTTGAAATGGCTGCAAAATTCAAAGATCCTCGTGATGCTTGTGCTGCAATTGTGGCAGAATCTTATCGACTCTGGCTGCAATATGAAACTCGTACAGATGACATCACAGTCATCATTGTACATGTAAATGGGCTAACTGCTGAAGTATGTCTACTGTTGCTCAGTCGGCTAGTTATGGTGATGTTTTGCGAAAACCTGTGCCACAAGTCGTAG 1239 0.5036 MGCIYSRVCIGDNCRGSSINGDPIARTTDVGEVANFSPTSSDVEEGEIRDQLNQLSITRDSEAGIRRLARVSAQFLPPDGSRIVKVPSENFELRYSFLSQRGYYPDALDKANQDSFCIHTPFGTSPNDHFFGVFDGHGEFGAQCSQFVKRKLCENLLRNSKFRGDPVEACHAAFLATNSQLHADVLDDSMSGTTAITVLVRGRTIFVANSGDSRAVIAERRGKEIVAVDLSIDQTPFRSDELERVKLCGARVLTLDQIEGLKDPDVQCWGTEEGDDGDPPRLWVPNGMYPGTAFTRSIGDSIAETVGVVANPEIVVFELTQDHPFFVLASDGVFEFLSSQSVVEMAAKFKDPRDACAAIVAESYRLWLQYETRTDDITVIIVHVNGLTAEVCLLLLSRLVMVMFCENLCHKS 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2136g00021 412 Gene3D - 84 385 IPR036457 -
Vium2136g00021 412 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 89 386 - -
Vium2136g00021 412 Pfam Protein phosphatase 2C 124 363 IPR001932 -
Vium2136g00021 412 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 67 388 - -
Vium2136g00021 412 SUPERFAMILY PP2C-like 82 386 IPR036457 -
Vium2136g00021 412 ProSitePatterns PPM-type phosphatase domain signature. 130 138 IPR000222 GO:0043169
Vium2136g00021 412 CDD PP2Cc 110 384 IPR001932 -
Vium2136g00021 412 ProSiteProfiles PPM-type phosphatase domain profile. 94 384 IPR001932 -
Vium2136g00021 412 SMART PP2C_4 90 382 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2136g00021 Vium-Chr2136 116588 120006 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2136g00021 1 387 PP2C-type Phosphatase Gene Family AT2G20050 73.945 0.0 612
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2136g00021 - - gmx:100799821 751.895