Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2136g00020 ATGGGTTGCATTTACTCGCGAGTTTGTATAGGTGACAACTGCAGAGGTTCAAGCATCAACGGAGACCCCATAGCCAGAACCACCGACGTTGGTGAAGTGGCTAATTTCTCGCCCACCTCTTCCGACGTTGAAGAAGGTGAAATCAGAGACCAGCTTAACCAATTGAGCATCACGAGGGACTCCGAAGCGGGAATCCGGAGATTAGCTAGGGTTTCGGCGCAGTTCCTGCCGCCGGACGGTTCACGAATCGTTAAAGTGCCTTCTGAGAACTTCGAATTGCGATACTCGTTTTTGTCTCAGAGAGGTTACTATCCCGATGCACTTGATAAAGCGAACCAGGATAGCTTCTGCATCCACACGCCTTTCGGTACGAGTCCTAATGACCACTTTTTTGGTGTCTTCGACGGCCATGGTGAGTTTGGAGCTCAGTGCTCGCAGTTCGTGAAGCGGAAATTGTGTGAGAATTTGCTCAGGAATTCTAAATTCCGTGGTGATCCTGTTGAGGCTTGTCATGCGGCGTTTTTGGCGACGAATTCGCAGCTGCATGCTGATGTTTTGGATGACAGCATGAGCGGGACGACGGCGATCACGGTGCTGGTGAGGGGCAGGACGATATTTGTGGCGAATTCCGGCGATTCGAGGGCGGTGATCGCGGAGAGGAGAGGGAAGGAAATTGTGGCCGTTGATTTGTCTATTGATCAGACGCCGTTTAGGAGTGATGAGCTTGAGAGGGTGAAACTCTGTGGGGCGAGGGTTCTTACTTTGGATCAGATTGAGGGGTTGAAGGACCCTGATGTGCAGTGTTGGGGCACTGAGGAGGGTGATGATGGTGACCCTCCGAGGTTGTGGGTGCCCAATGGGATGTACCCGGGGACGGCTTTCACAAGGAGTATTGGTGATTCTATTGCGGAGACTGTTGGGGTTGTGGCGAATCCTGAGATTGTTGTGTTTGAGCTCACGCAGGATCACCCTTTCTTTGTGCTTGCTAGTGATGGGGTGTTTGAGTTTCTCTCTAGCCAGAGTGTGGTTGAAATGGCTGCAAAATTCAAAGATCCTCGTGATGCTTGTGCTGCAATTGTGGCAGAATCTTATCGACTCTGGCTGCAATATGAAACTCGTACAGATGACATCACAGTCATCATTGTACATGTAAATGGGCTAACTGCTGAATCTACTGTTGCTCAGTCGGCTAGTTATGGTGATGTTTTGCGAAAACCTGTGCCACAAGTCGTAGAGGTGACAGGTTCAGAATCCCCTTCCACCTTTGGCTGGAGTGCTAGAAACCATCGTGTAAGACATGACTTGTCAAGGGCACGCCTCCGAGCACTTGAAAATTCCCTAGAAAATGGGCAAGCTTGGGTTCCTCCCCCTTCTGCCCATAGAAAGACATGGGAAGAAGAAGCACACATAGAGCAGGCATTGCACGATCATTTTCTCTTCCGAAAACTTACTGATTCTCAGTGTCATGTTCTATTGGATTGCATGCAAAGAGTGGAGGTCGAACCTGGGGATATTATAGTCAAACAGGGTGGTGAAGGTGACTGTTTTTATGTTGTTGGTAGTGGAGAATTTGAGGTCTTGGCAACTCAGGAAGAAAAAGAAGGGGATGTACCTAGGGTTTTGCAGCGCTACACAGCTGAAAAACTCTCATGTTTTGGAGAGCTTGCTCTAATGTACAACAAACCACTCCAGGCTTCTGTACGTGCTGTAACAAAAGGAACTCTTTGGGCTTTAAAACGAGAAGATTTTCGTGGGATTTTAATGTCAGAATTCTCTAACTTATCCTCATTGAAGTTGCTTCGATCTGTAGATCTCCTCTCAAGGTTATCAATTTTACAACTCAGTCAGATTTCTGACTCCCTTTCTGAAGTTTCCTTCTCAAATGGGCAGACAATAATAGACAATAATGAAATCCTTGCATTGTACATTATACAGAAGGGATGCGTAAAAATCACTTTTGATTCTGATTTGTTGACGAGTCCAAATGCCTACAGCCTCAAGCCTGACATCCAAAACGAGGAGAATGATGTTCAGAGCAGAACAGAACTATCTATAGAGAAGCTTGAGGGAAGCTATTTTGGTGAATGGACCCTTTATGGTGAACGTATTGGTTCCATAAATGCTGTTGCTGTGGGTGATGTTGTATGTGCTTTGCTAACAAAAGACAAATTTGAATCTGTTATTGGCTCCATACAAAAGATTTCTCCGGAAGATCACAAGTCAAAGGATAATTCCATGGAGTTGACTGGAAGAAATTATGATTTTTCATCCCTTGATAAAGTCCAGCTTTCAGATTTGGAGTGGAGAAAGACACTATATTCCACCGACTGTTCCGAAATAGGGGTTGCAAATTTAAAGGAATCAGAAAATTTGCTTACTTTAAAGAGATTTTCTAAGCCAAAGATCAAAAGGCTTGGAAAGGAATCACAGGTCTTGAAAGAGAAAGATTTGATTAAGGGTTTGGGCTCTTCAGTTAGTATACCACAGGTTTTATGCACTTGTGCTGATCGCATGTATGTTGGAATACTGCTAAATACTCACCTTGCTTGCCCTTTGTCTTCCATACTTTCAAGTCCTTTTAGTGAATCAGCCGCACGGTTTTGTGCTGCATCTGTTGTCACTGCTTTAGAAGACTTGCACAAGAATGGTGTTCTCTACAGAGGTGTGTCACCTGATGTTTTGATGTTGGAACAAACAGGACAGATACAGCTGGTCGACTTCAGATTTGGAAAACAGCTTTCTGGCGAGAGAACATTCACAATTTGTGGGATGGCAGATTCTCTGGCTCCAGAGATTGTTTTGGGAAAAGGCCATGGTTTCCCTGCCGACTGGTGGGCATTGGGGGTTTTAATATATTTTATGTTACGTGGTGAGATGCCATTTGGATCATGGAGAGAAAATGAACTTGATACAGTTGCCAAAATTGCAAAAAGGAAGCTACACCTTCCCGAGAGTTTCAGCTCTGAAACGGTTGATCTTATCTCCAAGCTACTTGAAGTGGAAGAAAACAATAGACTTGGAAGCCAAGGTCCTGATTCTGTCAAGAGTCACCCATGGTTTAAGGGTATTGATTGGGAAGGGATTAGAAGCCGCACTTTTCCTGTTCCTCAGGAAATTATTTCTCGTATAACACAGTACTTGGAAGTTCATTCTGAGGATTGTAGTACTCTCTATCCGGGATCGCCTTTGCAGGAGGTAGAAGAACTTAATGTGCCTGAGTGGCTTGAGGACTGGTAG 3237 0.452 MGCIYSRVCIGDNCRGSSINGDPIARTTDVGEVANFSPTSSDVEEGEIRDQLNQLSITRDSEAGIRRLARVSAQFLPPDGSRIVKVPSENFELRYSFLSQRGYYPDALDKANQDSFCIHTPFGTSPNDHFFGVFDGHGEFGAQCSQFVKRKLCENLLRNSKFRGDPVEACHAAFLATNSQLHADVLDDSMSGTTAITVLVRGRTIFVANSGDSRAVIAERRGKEIVAVDLSIDQTPFRSDELERVKLCGARVLTLDQIEGLKDPDVQCWGTEEGDDGDPPRLWVPNGMYPGTAFTRSIGDSIAETVGVVANPEIVVFELTQDHPFFVLASDGVFEFLSSQSVVEMAAKFKDPRDACAAIVAESYRLWLQYETRTDDITVIIVHVNGLTAESTVAQSASYGDVLRKPVPQVVEVTGSESPSTFGWSARNHRVRHDLSRARLRALENSLENGQAWVPPPSAHRKTWEEEAHIEQALHDHFLFRKLTDSQCHVLLDCMQRVEVEPGDIIVKQGGEGDCFYVVGSGEFEVLATQEEKEGDVPRVLQRYTAEKLSCFGELALMYNKPLQASVRAVTKGTLWALKREDFRGILMSEFSNLSSLKLLRSVDLLSRLSILQLSQISDSLSEVSFSNGQTIIDNNEILALYIIQKGCVKITFDSDLLTSPNAYSLKPDIQNEENDVQSRTELSIEKLEGSYFGEWTLYGERIGSINAVAVGDVVCALLTKDKFESVIGSIQKISPEDHKSKDNSMELTGRNYDFSSLDKVQLSDLEWRKTLYSTDCSEIGVANLKESENLLTLKRFSKPKIKRLGKESQVLKEKDLIKGLGSSVSIPQVLCTCADRMYVGILLNTHLACPLSSILSSPFSESAARFCAASVVTALEDLHKNGVLYRGVSPDVLMLEQTGQIQLVDFRFGKQLSGERTFTICGMADSLAPEIVLGKGHGFPADWWALGVLIYFMLRGEMPFGSWRENELDTVAKIAKRKLHLPESFSSETVDLISKLLEVEENNRLGSQGPDSVKSHPWFKGIDWEGIRSRTFPVPQEIISRITQYLEVHSEDCSTLYPGSPLQEVEELNVPEWLEDW 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2136g00020 1078 Gene3D Jelly Rolls 595 746 IPR014710 -
Vium2136g00020 1078 Pfam Protein kinase domain 786 1020 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2136g00020 1078 CDD PP2Cc 110 384 IPR001932 -
Vium2136g00020 1078 Gene3D - 84 385 IPR036457 -
Vium2136g00020 1078 ProSiteProfiles PPM-type phosphatase domain profile. 94 384 IPR001932 -
Vium2136g00020 1078 SMART PP2C_4 90 382 IPR001932 -
Vium2136g00020 1078 CDD CAP_ED 479 588 IPR000595 -
Vium2136g00020 1078 PRINTS cAMP-dependent protein kinase signature 724 736 - -
Vium2136g00020 1078 PRINTS cAMP-dependent protein kinase signature 515 529 - -
Vium2136g00020 1078 PRINTS cAMP-dependent protein kinase signature 550 559 - -
Vium2136g00020 1078 PRINTS cAMP-dependent protein kinase signature 500 514 - -
Vium2136g00020 1078 FunFam Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 453 593 - -
Vium2136g00020 1078 SUPERFAMILY Protein kinase-like (PK-like) 750 1054 IPR011009 -
Vium2136g00020 1078 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 465 1037 - -
Vium2136g00020 1078 SUPERFAMILY cAMP-binding domain-like 597 731 IPR018490 -
Vium2136g00020 1078 ProSiteProfiles cAMP/cGMP binding motif profile. 605 729 IPR000595 -
Vium2136g00020 1078 Gene3D Transferase(Phosphotransferase) domain 1 851 1036 - -
Vium2136g00020 1078 SUPERFAMILY cAMP-binding domain-like 460 589 IPR018490 -
Vium2136g00020 1078 Gene3D Jelly Rolls 454 594 IPR014710 -
Vium2136g00020 1078 ProSitePatterns PPM-type phosphatase domain signature. 130 138 IPR000222 GO:0043169
Vium2136g00020 1078 SMART serkin_6 774 1020 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2136g00020 1078 ProSiteProfiles cAMP/cGMP binding motif profile. 479 588 IPR000595 -
Vium2136g00020 1078 SMART cnmp_10 479 602 IPR000595 -
Vium2136g00020 1078 SMART cnmp_10 605 743 IPR000595 -
Vium2136g00020 1078 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 89 386 - -
Vium2136g00020 1078 FunFam Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 595 744 - -
Vium2136g00020 1078 Gene3D Phosphorylase Kinase; domain 1 764 850 - -
Vium2136g00020 1078 Pfam Protein phosphatase 2C 124 363 IPR001932 -
Vium2136g00020 1078 ProSiteProfiles Protein kinase domain profile. 766 1020 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2136g00020 1078 SUPERFAMILY PP2C-like 82 386 IPR036457 -
Vium2136g00020 1078 CDD CAP_ED 605 729 IPR000595 -
Vium2136g00020 1078 Pfam Cyclic nucleotide-binding domain 498 589 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2136g00020 Vium-Chr2136 111325 120001 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2136g00020 1 1078 PP2C-type Phosphatase Gene Family AT2G20050 67.636 0.0 1495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_PKA-PKG Vium2136g00020 Pkinase 1.5e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2136g00020 - - gmx:100799821 1959.5