Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2136g00019 ATGAGGAAAACCAGAACCATGAATGAGCTTGGTGTTATCCTTTCTGTTCTCTCAGTCTTATTCCTCCATGTTAGAGCACAGACTGTTGCACCTTCAGGAGATGCTGTGTCCAATTTCCAACCAAGTCTTGCTGTTGTCATAGGAATCCTTGGTGTCATGTTTCTATTGACATTCTTTCTTCTCATGTATGCAAAATTCTGTCAACACCGCGGAGCTTCAGCTTCTCTTGGAGACCAAGAAAATCTACCAACTTTTGTGAGATCAAGGTCTAGATTTTCAGGAATTGACAAGACTGTCATTGAATCACTCCCCTTCTTTAGATTCTCTTCACTCAAAGGGTCAAAGGAAGGGCTGGAGTGTGCAGTGTGCTTATCAAAGTTTGAAGATGTCGAAGTTCTCAGACTTCTACCAAAGTGCAAGCATGCTTTTCATATTGATTGCATAGACCACTGGCTTGAAAGGCACTCTAGCTGTCCTATTTGCAGGCACAAGGTCAACCCTGACGACCACACTACCTTCACATATTCAAACAGTTTAAGGAGGCTAGCAAACCAATCAGGTCTAGGTGAAGAATCTAACTTAGAGATCTTTGTCCAGAGAGAGGAAGATCATAATGGTTCATCAAGATTCAGTGTTGGAAGCAGCTTTCGGAAAATGGGAAAGGGTGTCAAGGAAGAAGAATTGCTCATCCAAAAAGGAGCAGAAGATAGTGATGGTAACCAGAAGGGGTATCATAAACACAACCACATGATTACTATATCTGATGTTGTGTTCAAGCACAGGTGGAGCAACGTCAGTTCTTCAGACCTCATGTTTTTGAACTCGGAGATGCTGAATGCTACATCAAGCAACAGATTCAGCAACTTCGAATCAAATGCAGACCTGATGTCAACCCCAAGAGAGGTGGTAGAAAATGATCATATTAAGAACATCAAGGAGGAGATGGAGAGGAAGATTTCCTTCGAGAGCAAAGTTAGTGCTCTTAGCAACTTCAAATCAGTTTCAGAAAAGGATCCTCCTTTTACATCAGATTCTGCAGGAAAATCAAATCATACACCAAAGTATGCAAACCCAGGTGAGAAAAGGTCAATGTCAGAAATCACTGCTGTCTCTAGATTTGGAGATTTTGGCACGAAAATGAGGGTCTTCAAGGATTCTTCTTCTGTCCAAAACAACCTTAAAGAGGAAAAAATGAGACAGATTTGGTTTCCAATAGCTAAAAGAACAGCTCAATGGTTTGTGAATAGAGAAAGAAGGTCTCAGCTATCTCTGGATAAACAACTACCATTAGATGTATAA 1299 0.4103 MRKTRTMNELGVILSVLSVLFLHVRAQTVAPSGDAVSNFQPSLAVVIGILGVMFLLTFFLLMYAKFCQHRGASASLGDQENLPTFVRSRSRFSGIDKTVIESLPFFRFSSLKGSKEGLECAVCLSKFEDVEVLRLLPKCKHAFHIDCIDHWLERHSSCPICRHKVNPDDHTTFTYSNSLRRLANQSGLGEESNLEIFVQREEDHNGSSRFSVGSSFRKMGKGVKEEELLIQKGAEDSDGNQKGYHKHNHMITISDVVFKHRWSNVSSSDLMFLNSEMLNATSSNRFSNFESNADLMSTPREVVENDHIKNIKEEMERKISFESKVSALSNFKSVSEKDPPFTSDSAGKSNHTPKYANPGEKRSMSEITAVSRFGDFGTKMRVFKDSSSVQNNLKEEKMRQIWFPIAKRTAQWFVNRERRSQLSLDKQLPLDV 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2136g00019 432 MobiDBLite consensus disorder prediction 334 352 - -
Vium2136g00019 432 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 171 IPR013083 -
Vium2136g00019 432 SMART ring_2 120 161 IPR001841 -
Vium2136g00019 432 MobiDBLite consensus disorder prediction 334 363 - -
Vium2136g00019 432 Pfam Ring finger domain 119 162 IPR001841 -
Vium2136g00019 432 CDD RING-H2_EL5-like 119 162 - -
Vium2136g00019 432 FunFam RING-H2 finger protein ATL43 95 169 - -
Vium2136g00019 432 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
Vium2136g00019 432 SUPERFAMILY RING/U-box 99 168 - -
Vium2136g00019 432 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 31 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2136g00019 Vium-Chr2136 106507 109360 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2136g00019 17 427 C3H Transcription Factor Family AT4G28890 47.727 4.53e-111 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2136g00019 K10664 - gmx:100803207 710.679