Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2136g00016 ATGGCTTCTTCCTTTCGTCCCTCAATTTCTTCCTTCATGTTACCCTCCCTTTCTTCTTGCAACCCTTCTCAAAAGTTCTCTCTTTTTCATCTGGGTAGCGGTATTAGACGGTTTCATGATTTTGGCCTGAAACCTTCTAAGTTTTTGAGGCATGATGATGATAACTGCATGAGGGCGAAGGCATCTGGGAACACGTCCTCAATTGCTGCACCAGAAAATGCCCTGGATTGGGTCAAACATGACAAGAGAAGAATGCTTCATGTTGTGTATCGTGTTGGGGACTTGGACAAGACCATAAAATTTTATACAGAGTGCCTGGGAATGAAGTTGCTCAGACAGCGTGACATGCAAGAGCAGAGACATACTAATGCCTTTCTTGGATATGGGCCTGAGGATGCACACTTTGCTGTTGAACTCACATACAATTATGGGATTGACAAGTATGACATTGGAGATGGATTTGGTCATTTTGGTCTTGCTGTTGATGATATCTCAAGAATAGTGGAACTTGTCAGAGCTAAGGGTGGAAAAATTACTAGAGAGCCTATGCTTGTCAAGGGAGGCAACTCAGTAAATGCATTTATTGAAGATCCTGATGGTTATCAATTTGAACTTTTAGAAAGGGCTCCCTCTCCCGAGCCTTTGTGCAAAGTAATGCTTCGAGTTTGTGATCTTGACCGTTCCATCAAATTTTATGAGAAGGCTTTTGGTATGGAGCTACTTCGAACACAGGATGATCCAGAATCCAAGAACACAATAGCAATACTGGGATATGGTCCAGAGGAAAAATGTACTGTCCTGGAGTTGACTTACAACTATGGAGTCACGAAATATGATAAAGGAGATGCTTATGCTCAGATTGCAATTGCTACAGATGATGTGTACAAAACTGCCGAAGCAATTAAACTTGCAGGAGGGAAGATTACTCGGGAACCTGGACCAATACCTGACATAAAGACAAAGATCACATCATGTGAGGATCCAGATGGTTGGAAAACTGTTTTTGTAGATAATATTGACTTCAGCAGGGAGCTGGAGTAG 1041 0.4217 MASSFRPSISSFMLPSLSSCNPSQKFSLFHLGSGIRRFHDFGLKPSKFLRHDDDNCMRAKASGNTSSIAAPENALDWVKHDKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRQRDMQEQRHTNAFLGYGPEDAHFAVELTYNYGIDKYDIGDGFGHFGLAVDDISRIVELVRAKGGKITREPMLVKGGNSVNAFIEDPDGYQFELLERAPSPEPLCKVMLRVCDLDRSIKFYEKAFGMELLRTQDDPESKNTIAILGYGPEEKCTVLELTYNYGVTKYDKGDAYAQIAIATDDVYKTAEAIKLAGGKITREPGPIPDIKTKITSCEDPDGWKTVFVDNIDFSRELE 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2136g00016 346 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 84 210 IPR029068 -
Vium2136g00016 346 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 84 208 IPR037523 -
Vium2136g00016 346 ProSitePatterns Glyoxalase I signature 1. 87 108 IPR018146 GO:0004462|GO:0046872
Vium2136g00016 346 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 214 338 IPR037523 -
Vium2136g00016 346 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Vium2136g00016 346 NCBIfam lactoylglutathione lyase 84 209 IPR004361 GO:0004462|GO:0046872
Vium2136g00016 346 FunFam Lactoylglutathione lyase 211 346 - -
Vium2136g00016 346 Gene3D - 56 210 IPR029068 -
Vium2136g00016 346 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 216 338 IPR029068 -
Vium2136g00016 346 PANTHER LACTOYLGLUTATHIONE LYASE 61 346 - -
Vium2136g00016 346 CDD GlxI_Ni 85 206 - -
Vium2136g00016 346 Gene3D - 211 346 IPR029068 -
Vium2136g00016 346 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 218 332 IPR004360 -
Vium2136g00016 346 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 85 205 IPR004360 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2136g00016 Vium-Chr2136 96443 100160 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2136g00016 217 335 Calmodulin-binding Proteins AT1G08110 28.082 4.80e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2136g00016 K01759 - gmx:100781439 604.749