Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2136g00013 ATGGAGCGCATCATTGGCGCCAAGTACAAGCTAGGTCGCAAGATCGGAAGCGGATCCTTCGGCGAAATCTACCTCGCGACGCATATTGATACCTTCGAAATCGTGGCGGTCAAGATCGAGAACAGTAAAACGAAGCATCCGCAATTGCTTTACGAGGCCAAGCTCTACAATATTCTACAGGGAGGAAGTGGCATCCCGAGCATAAAATGGTGTGGTGTCGACGGAGAGGACAATGTGCTTGTTATGGATTTGCTGGGACCTAGTCTTGAGGATCTGTTTGTTTACTGTGGAAGAAAGTTTTCCCTCAAAACCGTGTTGATGTTAGCTGATCAAATGATGACTAGAATCGAATATGTGCATTCTAAAGGATTCCTACACAGGGATATAAAACCTGACAACTTTCTCATGGGACTTGGTCGTAAGGCAAACCAGGTTTACATAATTGATTTTGGGCTTGCAAAACGATATAGGGACTCCTCAACTAATCGCCACATTCCTTACAGGGAAAACAAAAACTTAACAGGGACTGCTCGCTATGCAAGTTGCAATACTCATCTTGGGATTGAGCAAAGTCGACGGGATGATTTGGAGTCACTTGGGTATGTGCTTCTGTATTTTCTCAGAGGAAGCCTTCCTTGGCAAAACCTAAAGGCTGCAACAAAGAAGCAAAAGTATGATAAAATCTGTGAGAAGAAAGTAGCAACTCCTATTGAGGTTTTATGCAAATCTCATCCCGTAGAGTTTGCTTCATACTTTCATTATTGTCACTCTCTGACCTTTGATCAGCGACCTGATTATGGATTCTTGAAGCGCCTGTTTCGGGATCTATTTGCACGTGAAGGTTATGATTTTGATTATGTATTTGATTGGACTATTTTAAAGTACCAGCAGGCACAAAAGAATAGGGCCCAACCTCGCATGTCTACGGTCCCTGGAGCAAGCAGCAGTCCTGTAGTGCCAATGGATGTGGACAACAATCGAGGGGATGTCTCAGCAGAACGAATTAAATCAGGCAATGTAACTGGTTCCGGTGTTAAAATTCAGTTTAAATCACCTGGTTTAAAAAATCTGGGTTCTGAAAAGCCTCTTGACAAGAATATTTTTGGTGAAGCAAATATACCCTCTACCTCATACTCTCTTGCTGGCACCTCAAAAAGGAACTCTTTGAAGCCTGCCTTGTCCACTGAAGCTGCAAACATAGTAAACGGGCAAGGAAGTAATAAAATTGGCCCTTCAAGTAGCTGGATTTCATCTGTTCAGCGCATGTCTTCTGCCAAATGA 1281 0.4325 MERIIGAKYKLGRKIGSGSFGEIYLATHIDTFEIVAVKIENSKTKHPQLLYEAKLYNILQGGSGIPSIKWCGVDGEDNVLVMDLLGPSLEDLFVYCGRKFSLKTVLMLADQMMTRIEYVHSKGFLHRDIKPDNFLMGLGRKANQVYIIDFGLAKRYRDSSTNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQNLKAATKKQKYDKICEKKVATPIEVLCKSHPVEFASYFHYCHSLTFDQRPDYGFLKRLFRDLFAREGYDFDYVFDWTILKYQQAQKNRAQPRMSTVPGASSSPVVPMDVDNNRGDVSAERIKSGNVTGSGVKIQFKSPGLKNLGSEKPLDKNIFGEANIPSTSYSLAGTSKRNSLKPALSTEAANIVNGQGSNKIGPSSSWISSVQRMSSAK 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2136g00013 426 MobiDBLite consensus disorder prediction 404 426 - -
Vium2136g00013 426 CDD STKc_CK1_delta_epsilon 8 282 - -
Vium2136g00013 426 Gene3D Transferase(Phosphotransferase) domain 1 1 327 - -
Vium2136g00013 426 MobiDBLite consensus disorder prediction 303 322 - -
Vium2136g00013 426 FunFam Casein kinase I isoform delta-like 1 339 - -
Vium2136g00013 426 Pfam Protein kinase domain 9 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2136g00013 426 PANTHER CASEIN KINASE-RELATED 8 314 - -
Vium2136g00013 426 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2136g00013 426 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vium2136g00013 426 MobiDBLite consensus disorder prediction 303 321 - -
Vium2136g00013 426 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2136g00013 426 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Vium2136g00013 426 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2136g00013 Vium-Chr2136 87686 91487 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2136g00013 3 227 Miscellaneous Gene Families AT3G23000 28.632 3.11e-14 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Vium2136g00013 Pkinase 9.1e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2136g00013 K08960 - gmx:100805890 812.372