Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2134g00002 ATGTCCTCGGAGAAGGAGAGAGAGACCCAAGTTTACATCGCCAAGCTCTCTGAGCAAGCTGAGAGATATGAAGAAATGGTTGAATGCATGAAGGCGATTGCAAAACTTGATCTAGAATTGACCGTGGAAGAGAGGAATCTGCTGTCGGTGGGATATAAGAATGTGATTGGTGCACGAAGAGCTTCTTGGCGCATTATGTCATCGATTGAACAGAAGGAAGAGTCTAAAGGAAATGAGAGCAATGCAAAAATGATAAAGAATTATCGTCAGAAAGTGGAAGAGGAACTCTCCAAAATTTGCAGCGATATTCTTTCAATTATTGACAAGCATCTTGTTCCTTCTTCCACCTCTGGAGAAGCCACCGTTTTCTACTATAAGATGAAGGGTGACTATTATCGATATCTAGCTGAGTTCAAGACCGATCAAGAAAGAAAGGAGGCAGCCGAGCAATCACTGAAGGGATATGAGGCTGCTTTAGCTGCAGCAAACACAGATCTTCCATCAACACATCCAATTCGTCTTGGACTTGCACTCAACTTCTCAGTCTTCTATTATGAGATAATGAACTCTCCTGAAAGGGCCTGCCATTTGGCTAAGCAAGCTTTCGATGAAGCAATTGCTGAGTTAGACACCTTGAGTGAAGAGTCATACAAGGACAGCACCTTGATCATGCAGCTCTTGAGAGACAATCTCACTCTCTGGACCTCCGATTTGCCCGAGGATGGAGGTGATGAAATCAAACCAGAAGAAATCAAACCTGCTGCTCCTGAGCACTGA 777 0.4389 MSSEKERETQVYIAKLSEQAERYEEMVECMKAIAKLDLELTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKGNESNAKMIKNYRQKVEEELSKICSDILSIIDKHLVPSSTSGEATVFYYKMKGDYYRYLAEFKTDQERKEAAEQSLKGYEAALAAANTDLPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDLPEDGGDEIKPEEIKPAAPEH 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2134g00002 258 FunFam 14-3-3 protein epsilon 1 248 - -
Vium2134g00002 258 Coils Coil 145 165 - -
Vium2134g00002 258 Coils Coil 13 33 - -
Vium2134g00002 258 MobiDBLite consensus disorder prediction 240 258 - -
Vium2134g00002 258 SUPERFAMILY 14-3-3 protein 6 237 IPR036815 -
Vium2134g00002 258 MobiDBLite consensus disorder prediction 237 258 - -
Vium2134g00002 258 PANTHER 14-3-3 PROTEIN 7 237 IPR000308 -
Vium2134g00002 258 Coils Coil 195 215 - -
Vium2134g00002 258 PIRSF 14-3-3 1 247 IPR000308 -
Vium2134g00002 258 ProSitePatterns 14-3-3 proteins signature 2. 217 236 IPR023409 -
Vium2134g00002 258 SMART 1433_4 7 248 IPR023410 -
Vium2134g00002 258 ProSitePatterns 14-3-3 proteins signature 1. 45 55 IPR023409 -
Vium2134g00002 258 Gene3D - 1 246 IPR036815 -
Vium2134g00002 258 PRINTS 14-3-3 protein zeta signature 208 237 IPR000308 -
Vium2134g00002 258 PRINTS 14-3-3 protein zeta signature 39 68 IPR000308 -
Vium2134g00002 258 PRINTS 14-3-3 protein zeta signature 88 112 IPR000308 -
Vium2134g00002 258 PRINTS 14-3-3 protein zeta signature 154 180 IPR000308 -
Vium2134g00002 258 PRINTS 14-3-3 protein zeta signature 181 207 IPR000308 -
Vium2134g00002 258 PRINTS 14-3-3 protein zeta signature 119 141 IPR000308 -
Vium2134g00002 258 Pfam 14-3-3 protein 14 235 IPR023410 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2134g00002 Vium-Chr2134 26109 29401 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2134g00002 2 252 14-3-3 family AT1G26480 86.905 2.37e-163 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2134g00002 K06630 - gmx:100798385 483.411