Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2133g00001 ATGGAAACTGGTGCTGGCGGTAGCCAAGCCCAACGAAGCGGTCACACCGCAAGAGGAATTCCGCCACCGCAACCGCCCGAGGAACCGAATCTGCGGCCAGAATGCCGAGGACCAAGTGGAACTGAGCCGGACCTCATTCTGCAACCTGAATGGCGCCGTCGAAGACCAAGCGCTCCTCCTTCCGAACCTTCCAACCGTGGCGGCGAAGAGGAAATTCTTCTCCAACCAGAATGGAGGCGCTCAAAGCCAAGCGCGAGTGCCAGTGCCAGTGCCAGTGCCAGTACTAGTGTTTGGGAACCTGAATGGAGACGATCGAAAACAAGTTCAACGGCATTTCCGTGGGACCAGAATTACAGTGTTCGCAAACCTAGTGCGTCGAGTTCCAGTGGCGTTGAAAGACGCGGTGACCCTAACGACCTTTGGCGAGCTGCTCCGGCTACAGATTCCGTTGTTCCCAAGCTGGAAAAACTACAAATATCAAAACAGTTACCTACATCAACTTATATTCATGATAAAAAGGATAGAATATCACCTATTCAGAGACCTGATAATGGTGGTACGATAGCAATTCTAACTAGCAGACTCCGTGTCAATCATTTTCCTGTTAAGTTTGATCCAGAGCGTACCATAATGCATTATAGTGTTGGTGTCAAGCCTAAGGTTTCTTCAAAATTTGGTCAGCCTCAGAAATTATCAAAGTCTGATCTATCCATGATCAGAGAGAAACTGTTTTCTGACGATCCTGAGAGGTTGCCTTTGGAGATGACTGCACATGACGGTGCAAAAAATATTTATAGTGCAGTACAGTTACCAGAAGAGACCTTTACTGTGGAGATCGCTGATGGAGAGGACGAAAAGATTATTTCGTATAGTGTTACATTAACTCTTGTTAATAAACTCAGGCTTTGCAAGCTAATGGACTATCTTAGTGGGCATAACCTCTCCAATCCTAGGGATATTTTACAAGGTATGGATGTGGTGGTGAAAGAGAATCCTGCTAGACGAACTGTTTCTGTAGGAGGACGCTATTATCCCACAAATCCTCCTGTAGTAATGAAGGATCTTCACCATGGGATAATTGCTGTTGGGGGATTTCAGCATAGTTTAAAGCCTACATCTCAGGGTCTGTCCTTATGTGTAGACTACTCAGTTCTGGCTTTTCGAAAGGGAATGCCAGTCTTGGATTTCTTGCATGAGTGTATTGATAACTTTAAATTGGATGAATTCGAAAAATTTAGGAAATCTGTTGAGGATGCACTTGTTGGATTGAAAGTCAGTGTGACTCATCGTAAAAGCAATCGGAAATACATTATTTCAAGATTAACTCCTATGACTACAAGGTATGTCACTTTTTCCATTGATAATACCGGTGGATGGAATCGCCCAAAGGATGTTAGTCTTCTTACCTTTTTTAAAGACAAATATGGTAAGGAAATTATGTACAAAGATATTCCTTGTCTAGATTTAGGTAAAGACAAGAAGAACTATGTACCCATGGAATTCTGTGTTCTAGTTGAGGGCCAAAGATATCCCAAAGAGCGTCTGGGTAGTATTTCTGCAAATACATTGAAAACAATGTCACTTGCTCACCCAAATGAGAGGGAGTGTGCAATACATAAGATGGTGCAGTCTAGTGATGGACCTTGCAGGGGTGGTTTTACTCAAAATTTTGGAATGAGTGTCAACACAACTATGACAACTATTGTAGGACGAGTACTTGGCCCTCCAGAATTAAAGTTAGGTGATCCAAATGGAGAGATCATTAAATTAACAGTGGATCTGGAGAAATGTCACTGGAATCTTGCTGGAAGATCAATGGTGGAAGGTAAACCAGTTGAGCATTGGGGCATTATTGATTTCACTAGTCTTGGGCCATTTAGGTACAAATTAAGAGGCAAGGATTTCATTCAAAAGCTTATAGGTAAATACAAGAAATTGGGTATATACATGCAGGAGCCCATTTGGTATGAAGAATCTTCAATGAAGATACTTGCGAGTTATGATTTGCTATCTGAGTTACTTGAGAAAATTAACAACATTTGTAAATATAACCAAGTACACCTGCAATTTCTTATGTGTGTAATGGCTAAAAAAAGTTCTGGTTACAAGTACCTCAAATGGATTGCTGAGACCAAACTTGGGATAGTAACACAATGCTGCTTGTCTAACGGTGCGAATGAAGCAGAGGACAAATTTTATACCAATCTGGCTCTCAAGATCAATGCCAAACTTGGAGGCAGTAACGTGGAGCTCAGTAATGGGCTCCCTTACTTTGTGGGTGAAGGACATGTGATGTTTTTAGGGGCTGATGTCAACCATCCTGGTTATCAAGACACCAGGAGTCCATCAATTGCTGCTGTGGTCGCTACTATTAACTGGCCTGCTGCAAATCGTTATGCAGCACGTGTATGCCCACAATACAATCGAAGTGAGAAAATACTGAGCTTTGGGGATGTTTGCCTTGAGCTTGTTTCATGCTATAGGAGTATGAATGGAGTTAGGCCTGAAAGAATTGTTATTTTTCGTGATGGGGTGAGTGAGTACCAGTTTGACATGGTTCTTAACGAAGAACTGCTTGATTTGAAGAGAGCATTTCAAAGAGTAAACTACTTTTCAACGATCACTCTTATTGTGGCACAAAAACGACATCAAACTCGATTTTTTCCAGAGGGCTGGAGGGATGGATCTTCTAGTGGCAATATATTACCAGGAACAGTTGTGGACACAAGAGTTATACACCCTTTTGAGTTTGACTTCTACCTTTGTAGTTACTATGGAAACCTAGGTACAAGCAAGCCTACTCATTACCATGTTTTATGGGACGAGCACAAGTTTACATCTGATGAATTGCAGAAGCTCATATACGAGATGTGCTTCACCTTTGCCAAGTGCACTAAACCTGTATCTTTAGTTCCTCCTGTTTATTATGCTGACCTTGCTGCTTATAGAGGACGATTATACCATGAAGCAAGGATTGGGATGCAATCTCCAAAGCCAGCAAAAGATGCTTCCTCACTCTCACGAACCACTTCATTTGAACAGGGATTTTACGCGCTGCATGCTGACCTACAAAACATAATGTTCTTTATCTAA 3093 0.4219 METGAGGSQAQRSGHTARGIPPPQPPEEPNLRPECRGPSGTEPDLILQPEWRRRRPSAPPSEPSNRGGEEEILLQPEWRRSKPSASASASASASTSVWEPEWRRSKTSSTAFPWDQNYSVRKPSASSSSGVERRGDPNDLWRAAPATDSVVPKLEKLQISKQLPTSTYIHDKKDRISPIQRPDNGGTIAILTSRLRVNHFPVKFDPERTIMHYSVGVKPKVSSKFGQPQKLSKSDLSMIREKLFSDDPERLPLEMTAHDGAKNIYSAVQLPEETFTVEIADGEDEKIISYSVTLTLVNKLRLCKLMDYLSGHNLSNPRDILQGMDVVVKENPARRTVSVGGRYYPTNPPVVMKDLHHGIIAVGGFQHSLKPTSQGLSLCVDYSVLAFRKGMPVLDFLHECIDNFKLDEFEKFRKSVEDALVGLKVSVTHRKSNRKYIISRLTPMTTRYVTFSIDNTGGWNRPKDVSLLTFFKDKYGKEIMYKDIPCLDLGKDKKNYVPMEFCVLVEGQRYPKERLGSISANTLKTMSLAHPNERECAIHKMVQSSDGPCRGGFTQNFGMSVNTTMTTIVGRVLGPPELKLGDPNGEIIKLTVDLEKCHWNLAGRSMVEGKPVEHWGIIDFTSLGPFRYKLRGKDFIQKLIGKYKKLGIYMQEPIWYEESSMKILASYDLLSELLEKINNICKYNQVHLQFLMCVMAKKSSGYKYLKWIAETKLGIVTQCCLSNGANEAEDKFYTNLALKINAKLGGSNVELSNGLPYFVGEGHVMFLGADVNHPGYQDTRSPSIAAVVATINWPAANRYAARVCPQYNRSEKILSFGDVCLELVSCYRSMNGVRPERIVIFRDGVSEYQFDMVLNEELLDLKRAFQRVNYFSTITLIVAQKRHQTRFFPEGWRDGSSSGNILPGTVVDTRVIHPFEFDFYLCSYYGNLGTSKPTHYHVLWDEHKFTSDELQKLIYEMCFTFAKCTKPVSLVPPVYYADLAAYRGRLYHEARIGMQSPKPAKDASSLSRTTSFEQGFYALHADLQNIMFFI 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2133g00001 1030 SMART Piwi_a_2 690 988 IPR003165 GO:0003676
Vium2133g00001 1030 MobiDBLite consensus disorder prediction 1 15 - -
Vium2133g00001 1030 Gene3D - 757 1030 IPR036397 GO:0003676
Vium2133g00001 1030 Gene3D - 572 752 - -
Vium2133g00001 1030 CDD Piwi_ago-like 553 987 IPR045246 -
Vium2133g00001 1030 Pfam N-terminal domain of argonaute 194 328 IPR032474 -
Vium2133g00001 1030 ProSiteProfiles PAZ domain profile. 391 506 IPR003100 GO:0005515
Vium2133g00001 1030 CDD PAZ_argonaute_like 391 505 - -
Vium2133g00001 1030 MobiDBLite consensus disorder prediction 1 140 - -
Vium2133g00001 1030 SMART PAZ_2_a_3 391 528 IPR003100 GO:0005515
Vium2133g00001 1030 Pfam Argonaute linker 1 domain 341 389 IPR014811 -
Vium2133g00001 1030 ProSiteProfiles Piwi domain profile. 690 989 IPR003165 GO:0003676
Vium2133g00001 1030 SUPERFAMILY PAZ domain 386 544 IPR036085 GO:0005515
Vium2133g00001 1030 MobiDBLite consensus disorder prediction 81 133 - -
Vium2133g00001 1030 SMART DUF1785_2 337 390 IPR014811 -
Vium2133g00001 1030 Pfam PAZ domain 395 521 IPR003100 GO:0005515
Vium2133g00001 1030 FunFam Protein argonaute 7 385 510 - -
Vium2133g00001 1030 SUPERFAMILY Ribonuclease H-like 677 989 IPR012337 -
Vium2133g00001 1030 Pfam Piwi domain 691 985 IPR003165 GO:0003676
Vium2133g00001 1030 Gene3D paz domain 385 510 - -
Vium2133g00001 1030 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 194 990 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2133g00001 Vium-Chr2133 2863 7967 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2133g00001 195 1029 Eukaryotic Initiation Factors Gene Family AT1G48410 34.768 1.10e-144 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2133g00001 K11593 - gmx:100783571 1786.16