Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium212g00002 ATGAGGGGTGGGAGAAAGAGGAGTATGATAAAGCTTAAGTTTAGCAAGATCTACTCATTTGCTTGTGGTAGAACAACCTTGAAGAGAGAACATTCGCGGATTGGGGGACATGGTCATTCCAGGGTTGTTTTCTGCAATGAACCTGATAGGTTTGAGGTAGGGGTTTTGAATTATGCTGATAATTCTGTTAGGTCCACAAAATACACGGTTGCTACTTTATTGCCAAAGTCACTTTTTGAGCAGTTTAGGAGGGTGGCTAATTTCTATTTCTTGGTGGCTGGGATCTTGGCCTTCACAAAGCTTACTCCTTATACTGCTGTCAGTGCTATCCTTCCACTCTCTATCATCATTGGGGCAACTATGGTGAAAGAGGGTATTGAAGACTGGCGCAGGAAAAAGCAGGATATTGAGGTGAACAATAGAAGAGTTATATTGCATAAAGGTGATGGCATTTTTGAATATACTGAATGGAAGAATCTGAGAGTAGGGAATATAGTGAAGATAATGAAGGATGAATTCTTCCCTGCTGACCTCCTACTGCTTTCCTCCAGTTATGAGGATGCAGTATGCTATGTTGAGACCATGAACTTGGATGGTGAAACAAATTTGAAATTAAAACAAGGGTTGGATGTAACTTCTTCCTTACAGGAGGACTTCAAAATATGTGATTTTAGAGCTGTCATCAAATGTGAGGACCCAAATGCAAATCTGTATTCTTTTGTTGGAAGCATGGAGTTTGAAGAGCAAAAGTACCCTCTTTCTGCTCAGCAACTTCTTCTAAGAGACTCCAAACTTCGCAATACAGACTATGTGTTTGGAGCCGTCATCTTTACCGGTCATGACACAAAGGTTATTCAAAACTCCACTGATCCTCCTTCGAAAAGAAGCAAAATTGAGAAGAAGATGGATAAGATTATCTACTTCTTGTTTTGTGTTTTATTTCTAATTGCATTTGTTGGATCTATTATCTTTGGCATCATAACCAAAGGAGACCTGAAAAATGGGTTGATGAAAAGATGGTATCTAAGACCAGATAGTTCCACAATTTTCTTTGATCCAGAGAGAGCAGCTGCAGCTGCTATATTTCATTCTTTAACAGCCTTAATGTTATATAACTTCTTTATTCCTATCTCTCTGTATTTCTCAATAGAAATTGTCAAAGTCCTTCAGAGCATCTTCATCAATCAAGATATCCACATGTACTATGAAGAAGCAGACAAACCAGCTCGTGCTCGTACTTCAAACTTGAATGAGGAACTAGGCCAAGTTGACACAATACTTTCTGATAAAACTGGGACTCTGACCTGCAACTCAATGGAGTTCATCAAATGTTCTGTTGCTGGGGTAGCTTATGGTCATGGTGTAACAGAGGTTGAGCAAGTCACCGGAAGAAGTAACGGTTCACCTATTCTTCATGAGCATATTAATGGTCTAAAATCAAAATCTAATGAAAAGGGGGACTCTCCAGGTAGAAAAGAGCCTATCAAAGGTTTTAATTTTACAGACGAAAGGATAATGAATGGGAACTGGGTTAATGAGCCTTTTGCTGATGTTATACAAAAGTTTTTTCGCTTATTGGCAATTTGTCATACTGCCATACCAGAAATGGATGAAGAAACAGGAAATGTCTCATATGAGGCTGAATCTCCAGATGAAGCAGCATTTGTGATTGCTGCAAGTGAAGTTGGTTTTAAATTCTACAAAAGGACCCAGAATTGCTTGTCAACGTATGAGTTGGATCCTGTTTCTGGTAATGAAGTTGAAAGATTAATTTCAATTAACAGGACATACAAGCTTCTCAATGTTTTAGAGTTTAGTAGTTCAAGGAAGCGAATGTCAGTGATAGTGAAAGATGAAGAAGGGAGAATTTTACTACTCTCTAAAGGTGCTGACAGTGTCATGTTTGAAAGGCTTGCCAACAATGGGAGGACGTTTGAAGAGAAAACAATGGAACATGTGCATCAATATGCTGATGCAGGTCTAAGGACTCTAATTCTTTCTTATCGTGAACTTGATGAAGAAGAATACAAGGAGTTTGATGGTAAATTGTCTGAAGTAAAAAATTCAGTCTCAGAAGACCGGGAAACACTGATTGAAGAATTATTGGATACGATTGAGAGGAATCTAATCCTTCTTGGTGCCACTGCTGTAGAGGACAAGCTCCAAAATGGGGTTCCTGATTGTATCGACAAGCTAGCCCAAGCTAAGATTAAGGTTTGGGTTTTGACTGGAGATAAAATGGAGACTGCCATCAATATTGGTTTCTCTTGTCGCTTGCTTAGACAAGGAATGAAACAAATTATAATTCATTTGGATATTCCAGAAATTCAAGCGTTAGAAAAGGTTGGAGACAAGATGGCTGTTGTGAAGGTATCAAGGGAAAGTGTGCATCATCAGCTATCTGAAGGTGCTCAACTGCTTTTTGCATCCAGAGGGACTTGCCAGCAGACATTTGCTCTGATCATTGATGGAAAATCACTAACATATGCTCTAGAGGATAATATGAAAAACATGTTTCTAGAGCTTGCAAGTCATTGTGCATCTGTTATCTGCTGCCGTTCATCGCCAAAGCAGAAGGCTCTGGTTACTAGACTGGTCAAATCTGGAACTGGTAAAACAACATTAGCTATTGGTGATGGAGCTAATGATGTCGGAATGCTTCAAGAAGCAGACGTAGGGATTGGAATCAGTGGCGTCGAAGGAATGCAGGCCGTCATGTCTAGTGATATTGCAATTGCGCAGTTCAAGTATTTGGAAAGATTACTTCTTGTACATGGACATTGGTGTTACCGGAGGATGTCATCAATGATATGCTATTTTTTCTTTAAGAACATCACATTTGGATTCACCCTATTCTTGTATGAGGTGTATGCATCATTCTCTGGACAGCCTGCATACAATGACTGGTTTTTGTCTCTCTATAGTGTCTTCTTTTCGTCACTTCCTGTAATTGCCCTTGGGGTCCTTGACCAGGATGTATCTGCCAGGTACTGCCTGAAGTTTCCTATCTTATACCAAGAAGGGGTGCAAAATGTCCTCTTTAGCTGGCGTATAGTACTTAGTTGGATGCTTAATGGATTTATTAATGCCACAATGATATTCTTCTTCTGCACAAAAGCAATTGAGCCTCAGGCCTTTGATGAGGAGGGAAGAACGGCCGGAAGGGATATGCTGGGCGTGACAATGTATACCTGCGTGGTTTGGGTGGTGAACTTGCAGATGGCACTTGCTATACGTTATTTCACCTTGATACAACATATTTTTATCTGGGGTTCCATTGCTTTCTGGTATCTTTTCCTCCTGGCATATGGAGCAATGCCTCCAAAATTTTCTACAAATGTTTATCAAGTCTTCATTGAAACTCTCGCCACATCTCCTTCCTTTTGGGCTGTGACATTCTTTGTGGCGATCTCAACACTTATACCATACTTCACATTCTCAGTAATACAGATGTGGTTCTTCCCCATGTATCACCAAATGGTACAGTGGATAAGGTATGAGAGAAAGACAAATGGCACTGAATAA 3525 0.3994 MRGGRKRSMIKLKFSKIYSFACGRTTLKREHSRIGGHGHSRVVFCNEPDRFEVGVLNYADNSVRSTKYTVATLLPKSLFEQFRRVANFYFLVAGILAFTKLTPYTAVSAILPLSIIIGATMVKEGIEDWRRKKQDIEVNNRRVILHKGDGIFEYTEWKNLRVGNIVKIMKDEFFPADLLLLSSSYEDAVCYVETMNLDGETNLKLKQGLDVTSSLQEDFKICDFRAVIKCEDPNANLYSFVGSMEFEEQKYPLSAQQLLLRDSKLRNTDYVFGAVIFTGHDTKVIQNSTDPPSKRSKIEKKMDKIIYFLFCVLFLIAFVGSIIFGIITKGDLKNGLMKRWYLRPDSSTIFFDPERAAAAAIFHSLTALMLYNFFIPISLYFSIEIVKVLQSIFINQDIHMYYEEADKPARARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVAGVAYGHGVTEVEQVTGRSNGSPILHEHINGLKSKSNEKGDSPGRKEPIKGFNFTDERIMNGNWVNEPFADVIQKFFRLLAICHTAIPEMDEETGNVSYEAESPDEAAFVIAASEVGFKFYKRTQNCLSTYELDPVSGNEVERLISINRTYKLLNVLEFSSSRKRMSVIVKDEEGRILLLSKGADSVMFERLANNGRTFEEKTMEHVHQYADAGLRTLILSYRELDEEEYKEFDGKLSEVKNSVSEDRETLIEELLDTIERNLILLGATAVEDKLQNGVPDCIDKLAQAKIKVWVLTGDKMETAINIGFSCRLLRQGMKQIIIHLDIPEIQALEKVGDKMAVVKVSRESVHHQLSEGAQLLFASRGTCQQTFALIIDGKSLTYALEDNMKNMFLELASHCASVICCRSSPKQKALVTRLVKSGTGKTTLAIGDGANDVGMLQEADVGIGISGVEGMQAVMSSDIAIAQFKYLERLLLVHGHWCYRRMSSMICYFFFKNITFGFTLFLYEVYASFSGQPAYNDWFLSLYSVFFSSLPVIALGVLDQDVSARYCLKFPILYQEGVQNVLFSWRIVLSWMLNGFINATMIFFFCTKAIEPQAFDEEGRTAGRDMLGVTMYTCVVWVVNLQMALAIRYFTLIQHIFIWGSIAFWYLFLLAYGAMPPKFSTNVYQVFIETLATSPSFWAVTFFVAISTLIPYFTFSVIQMWFFPMYHQMVQWIRYERKTNGTE 1174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium212g00002 1174 Gene3D - 120 289 - -
Vium212g00002 1174 Pfam Phospholipid-translocating P-type ATPase C-terminal 905 1155 IPR032630 -
Vium212g00002 1174 NCBIfam HAD-IC family P-type ATPase 849 959 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium212g00002 1174 Gene3D - 576 686 IPR023299 GO:0000166
Vium212g00002 1174 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 40 1166 - -
Vium212g00002 1174 SUPERFAMILY HAD-like 422 932 IPR036412 -
Vium212g00002 1174 ProSitePatterns E1-E2 ATPases phosphorylation site. 429 435 IPR018303 -
Vium212g00002 1174 SUPERFAMILY Calcium ATPase, transmembrane domain M 57 1155 IPR023298 -
Vium212g00002 1174 SFLD Haloacid Dehalogenase 411 928 - -
Vium212g00002 1174 FunFam Phospholipid-transporting ATPase 548 712 - -
Vium212g00002 1174 MobiDBLite consensus disorder prediction 463 495 - -
Vium212g00002 1174 FunFam Phospholipid-transporting ATPase 119 289 - -
Vium212g00002 1174 NCBIfam phospholipid-translocating P-type ATPase 58 1162 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Vium212g00002 1174 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 505 714 IPR023299 GO:0000166
Vium212g00002 1174 FunFam Phospholipid-transporting ATPase 712 917 - -
Vium212g00002 1174 SFLD p-type atpase 411 928 IPR044492 -
Vium212g00002 1174 CDD P-type_ATPase_APLT_Dnf-like 60 1037 - -
Vium212g00002 1174 Gene3D - 708 917 IPR023214 -
Vium212g00002 1174 MobiDBLite consensus disorder prediction 477 495 - -
Vium212g00002 1174 PRINTS P-type cation-transporting ATPase superfamily signature 427 441 - -
Vium212g00002 1174 PRINTS P-type cation-transporting ATPase superfamily signature 877 896 - -
Vium212g00002 1174 SUPERFAMILY Calcium ATPase, transduction domain A 145 286 IPR008250 -
Vium212g00002 1174 Pfam Phospholipid-translocating ATPase N-terminal 44 109 IPR032631 -
Vium212g00002 1174 Pfam Cation transport ATPase (P-type) 538 637 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium212g00002 Vium-Chr212 42960 58509 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium212g00002 3 1174 Primary Pumps ATPases AT1G68710 70.284 0.0 1768
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium212g00002 K01530 - gmx:100798329 2120.51