Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2126g00011 ATGCAGAGCCAACTTGTGTGCAATGGTTGTAGGAGCCTTCTGCTTTACCCGAGAGGGGCAACCAATGTTTGTTGTGCATTGTGCAACACGATTACCTCTGTTCCTCCACCTGGGATGGAAATGTCTCAACTTTACTGTGGAGGCTGTAGGACGTTGTTAATGTATACTCGTGGAGCTACAAGTGTGAGATGTTCCTGCTGTCATACTGTAAACCTTGTTCCAGCAACTAATCAGGTAGCTCATGTCCATTGTGGGAACTGCCGGACAGCCCTCATGTATCCTTACGGAGCTCCCTCAGTCAAATGTGCTATTTGCCACTATGTTACTAATACGAACAATGGACGGCTTCCAATCCCTGTCCATAGACCCAATGGGACAGCCAATACTGGAACATTACCTTCTACTTCAACATCAATGCCTCAGTCTCAAAGTCAAACAGTAGTAGTAGAAAATCCAATGTCTGTGGATTCGAGTGGGAAATTGGTGAGCAATGTTGTGGTCGGCGTCACAACAGATAAGAAATAG 525 0.459 MQSQLVCNGCRSLLLYPRGATNVCCALCNTITSVPPPGMEMSQLYCGGCRTLLMYTRGATSVRCSCCHTVNLVPATNQVAHVHCGNCRTALMYPYGAPSVKCAICHYVTNTNNGRLPIPVHRPNGTANTGTLPSTSTSMPQSQSQTVVVENPMSVDSSGKLVSNVVVGVTTDKK 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2126g00011 174 Pfam LSD1 zinc finger 7 31 IPR005735 -
Vium2126g00011 174 Pfam LSD1 zinc finger 46 70 IPR005735 -
Vium2126g00011 174 Pfam LSD1 zinc finger 84 108 IPR005735 -
Vium2126g00011 174 MobiDBLite consensus disorder prediction 116 141 - -
Vium2126g00011 174 MobiDBLite consensus disorder prediction 124 141 - -
Vium2126g00011 174 NCBIfam zinc finger domain, LSD1 subclass 4 34 IPR005735 -
Vium2126g00011 174 NCBIfam zinc finger domain, LSD1 subclass 81 109 IPR005735 -
Vium2126g00011 174 NCBIfam zinc finger domain, LSD1 subclass 43 73 IPR005735 -
Vium2126g00011 174 PANTHER PROTEIN LSD1 2 173 IPR040319 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2126g00011 Vium-Chr2126 128694 138391 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Vium2126g00011 zf-LSD1 8.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2126g00011 - - gmx:100527656 341.658