Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2126g00008 ATGTTTCTCCCTATCATTTTTTATCGAGTCAACATATTTGGTGTTCTTACATGTGATACTTTGCAGGATAGTCTTCTTAGGCATAAGCCAGAAATGGAAATCTCATTTGAGTCTTCTGCCAGTCCGCAGCATAAAAAGATATCAGCCAGATGGGATCCGGTTGAAGCATGCCGGCCTATAATTGATGAAGCACCTGTGTTCTATCCAACTATTGAAGAGTTTGAAGACACACTTGGTTACTTAGCTAAGATTCGCCCCCAAGCTGAACCTTATGGAATATGTAGGATTGTCCCTCCAGCTTGCTGGGTACCACCATGCCCTCTTAAGGAGAAAGATTTATGGGAAAATGCAAAGTTTCCCACTCGTATCCAGCAAATTGATTTGCTTCAGAACAGGGAGCCCATGAGAAAGAAAATTAGGGGAAGGAAGCGAAAACGTAGAAAGCAATCAAAGATGGGAGCAGGTAGGAGAACTGCCAAATCAGGCTCTGAAGCTAATGTTGCTTCTGAGCCTGAGGAGAAGTTTGGATTCCAATCTGGGTCAGACTTCACACTTAAAGACTTTCAGCAATATGCTAAGGTTTTTAAAGATTGCTACTTTGGATTGAATAATGCCAATGAATATGGAAAAGTTAGCGATTATAATCACTGGCAGAAACGGGAGCCCTCTGTGGAAGACATTGAAGGTGAATACTGGAGAATAATAGAGAAACCAACAGATGAGGTTGAGGTGTATTATGGAGCTGACTTGGAAACTGGATCACTTGGAAGTGGCTTTCCTAAGACATCATCTTTAACTAATAATGATTCAGATAGATATGCTGTGTCTGGCTGGAATCTGAATAACTTCCCGCGATTGCCAGGTTCTGCGTTATGTTTTGAAGGAAGTGATATCTCAGGAGTTCTAGTTCCATGGCTGTATATTGGAATGTGCTTTTCCTCATTTTGCTGGCATGTCGAGGATCATCATCTCTATTCACTTAATTATCTGCATTGGGGTGACCCAAAAGTATGGTATGGAGTACCTGGAATCCATGCTCCAGGTTTGGAAGCTGCAATGAGAAAGCACTTGCCTGATTTATTTGAAGAACAACCGAATCTACTCAATGAATTGGTGACTCAGCTATCTCCATCAATTCTTAAATCCGAGGGGGTGCCCGTACATTGCACTGTTCAGAATTCAGGTGAATTTGTTGTTACCTTTCCAAGGGCGTATCACTGTGGCTTCAATTGCGGCTTCAATTGCGCAGAGGCTGTGAATGTGGCTCCGGTTGATTGGCTTGTGCATGGCCAAAATGCTGTTGAGCTTTACAGTTTGCAGTGCCGTAAGACTTCATTGTCCCATGACAAGTTATTATTTGGATGTGCTCAAGAAGCCGTGTGTGCCCTTGCAGAGGCAACTCTTCATGAAAAAGAAAATCTAAAATATATAAAATGGAGTAGTGCTTGTGGGAAAGATGGAGTTCTTACCAAGGCAATTAAGACAAGGATAACTATGGAAAAGGAGAGGCTTGGCTGTCTTCCCACTCATTTAAAGAAGCTTAGGATGAACAGTGAGTTTGATTTGTTTGAGGAAAGAGAATGCTTCTCTTGCTTCTATGACTTGCACCTATCCGCCGTAGGTTGCAAGTGCTCCCCCGATACTTATTCATGTCTAAAGCACTCACACTTGTTTTGCTCATGTGAAGTGGACAAAAGATTTATTCTGTCTCGTTATACCATGAATGAACTAAGTACATTGGTTGAGGCATTAGAAGGAGAAACACATGCTATTCTAGTGTGGGCAAATAGAAACACTGGACTGGTATCTGCTAATCCTGAGGATGCTTGCATTTATAAACAAGATGCGGAGAGTTACAAAGGATGGAAAAGCTTAACACATTGTGCAGGAACTAATAATAAGTCAAATTCAAATATACCTAGCAGTTCTCATAGCCACATTTCTGCGGAGTTAGAGCACTCAGAGTTTCACCGTGAAATTTATAGTGCACAATATGGCACTAAAGATTGTCAAAAAGATATTGAGAATGAAGAAAAATTGGTCATGTACAATGAAGATAAGATGAAGGAAGGTTCTCTGGATTTAAATATTGATGTTATGTTTGTTGAACGTGAAAATCGTTTTCTGCATGCTGCTGAATACCATCATAATAAGAGTGTTCCATATGTTGGAAAAGTATGCTATTCAGAGGTCAGAAAGAAACAAGACAACATGGAACCTGGGGCTGGATATATAGCTTCCTCGGAGAAAGAATTTTCATCATGTTCAAGGAACGTTCAAAATTCTTCTACACTAGATGGTTATAAATTGTTTGGGGTGGACCTACAGTTGCGTTCTGATTCGAGAGAACAACTCAACGGTGTATTTAAAATAGGTGATGTTGAAACTTCCAATGCAAGTGTATCTTTGACAAACCAAAACTTCTTAATGCAGAAGATTAGTGTTTCTGTTGAGCCTGTGAATTTGGGCATTGTTATGTGTGGTAAGTTGTGGTGCAGTAGGCATGCAATATATCCAAAAGGATTCAAGAGTCGTGTTAAGTTCTTAAGCATTCTTGATCCACCAAGAATCTGTAACTATGTTTCTGAAGTCTATGATGCTGGATTTCTTGGGCCTCTTTTCAAGGTTACCATTGAAGAACATCCAAGTGAGATCTTCACAAACACCTCGGCAGACAAGTGCTGGGAGTCAGTTCTTTTGAGACTAAATCATGAAACCGAGAAGCTAAGGAATCAAGGTCAAAGAGAACTTCCTCCCTTGGAGCTTCTGAAAAGCATTAATGGTCATAAAATGTTTGGATTCCTTTCACCTTCCATTATTCAGGCTATTGAAGCTCTGGACCCCAATCATCAATGCGTCGAGTACTGGAATCACAAAGAAGTTGTCTCTGAATCTTCAGAAAGTGGCATTGATGACTGTAAGCTCAGTCACGGTTCAAGTAACTCTCTAAGTGATGTCAAAACCAGACTTCTTGGTCCTGGTTTGAGAAAGCTGGAACAAGATAGCAGCAGAAGACATTGTGATTCATTTGAAGAGATGAAATTGGTGGTAGAAGGGTTATTGAAAAAGGCGAATGCTGAAGAATTAAGTGCCATGCACAAGTTATTCAGCTCTGATGCACAGTTCAACAATTGGAGAGTGGCATTTGTAACGCTGATTGAGGAAATCCAGAAAGCTTGTGCATAA 3186 0.4062 MFLPIIFYRVNIFGVLTCDTLQDSLLRHKPEMEISFESSASPQHKKISARWDPVEACRPIIDEAPVFYPTIEEFEDTLGYLAKIRPQAEPYGICRIVPPACWVPPCPLKEKDLWENAKFPTRIQQIDLLQNREPMRKKIRGRKRKRRKQSKMGAGRRTAKSGSEANVASEPEEKFGFQSGSDFTLKDFQQYAKVFKDCYFGLNNANEYGKVSDYNHWQKREPSVEDIEGEYWRIIEKPTDEVEVYYGADLETGSLGSGFPKTSSLTNNDSDRYAVSGWNLNNFPRLPGSALCFEGSDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGIHAPGLEAAMRKHLPDLFEEQPNLLNELVTQLSPSILKSEGVPVHCTVQNSGEFVVTFPRAYHCGFNCGFNCAEAVNVAPVDWLVHGQNAVELYSLQCRKTSLSHDKLLFGCAQEAVCALAEATLHEKENLKYIKWSSACGKDGVLTKAIKTRITMEKERLGCLPTHLKKLRMNSEFDLFEERECFSCFYDLHLSAVGCKCSPDTYSCLKHSHLFCSCEVDKRFILSRYTMNELSTLVEALEGETHAILVWANRNTGLVSANPEDACIYKQDAESYKGWKSLTHCAGTNNKSNSNIPSSSHSHISAELEHSEFHREIYSAQYGTKDCQKDIENEEKLVMYNEDKMKEGSLDLNIDVMFVERENRFLHAAEYHHNKSVPYVGKVCYSEVRKKQDNMEPGAGYIASSEKEFSSCSRNVQNSSTLDGYKLFGVDLQLRSDSREQLNGVFKIGDVETSNASVSLTNQNFLMQKISVSVEPVNLGIVMCGKLWCSRHAIYPKGFKSRVKFLSILDPPRICNYVSEVYDAGFLGPLFKVTIEEHPSEIFTNTSADKCWESVLLRLNHETEKLRNQGQRELPPLELLKSINGHKMFGFLSPSIIQAIEALDPNHQCVEYWNHKEVVSESSESGIDDCKLSHGSSNSLSDVKTRLLGPGLRKLEQDSSRRHCDSFEEMKLVVEGLLKKANAEELSAMHKLFSSDAQFNNWRVAFVTLIEEIQKACA 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2126g00008 1061 ProSiteProfiles FYR domain FYRN motif profile. 809 867 IPR003888 GO:0005634
Vium2126g00008 1061 Pfam JmjC domain, hydroxylase 305 421 IPR003347 -
Vium2126g00008 1061 SMART JmjN_1 63 104 IPR003349 -
Vium2126g00008 1061 Gene3D Cupin 49 422 - -
Vium2126g00008 1061 Gene3D - 815 953 - -
Vium2126g00008 1061 SMART fyrc_3 873 968 IPR003889 GO:0005634
Vium2126g00008 1061 MobiDBLite consensus disorder prediction 136 154 - -
Vium2126g00008 1061 PANTHER LYSINE-SPECIFIC DEMETHYLASE 59 848 - -
Vium2126g00008 1061 Pfam F/Y rich C-terminus 871 958 IPR003889 GO:0005634
Vium2126g00008 1061 ProSiteProfiles JmjC domain profile. 272 438 IPR003347 -
Vium2126g00008 1061 ProSiteProfiles FYR domain FYRC motif profile. 869 959 IPR003889 GO:0005634
Vium2126g00008 1061 SMART fyrn_3 823 867 IPR003888 GO:0005634
Vium2126g00008 1061 ProSiteProfiles JmjN domain profile. 64 105 IPR003349 -
Vium2126g00008 1061 Pfam C5HC2 zinc finger 528 580 IPR004198 -
Vium2126g00008 1061 SUPERFAMILY Clavaminate synthase-like 268 459 - -
Vium2126g00008 1061 FunFam Putative lysine-specific demethylase JMJ16 815 953 - -
Vium2126g00008 1061 MobiDBLite consensus disorder prediction 134 172 - -
Vium2126g00008 1061 SMART cupin_9 272 438 IPR003347 -
Vium2126g00008 1061 Pfam jmjN domain 65 98 IPR003349 -
Vium2126g00008 1061 Pfam F/Y-rich N-terminus 820 864 IPR003888 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2126g00008 Vium-Chr2126 101614 108623 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2126g00008 771 995 JUMONJI Transcription Factor Family AT1G30810 48.000 3.61e-53 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vium2126g00008 JmjC 1.4e-43 CL0029