Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2126g00007 ATGAAACAGTTGAAATTGGCTGCAGAATTTCACGCTATAGCGGATAGTCTTCTTAGGCATAAGCCAGAAATGGAAATCTCATTTGAGTCTTCTGCCAGTCCGCAGCATAAAAAGATATCAGCCAGATGGGATCCGGTTGAAGCATGCCGGCCTATAATTGATGAAGCACCTGTGTTCTATCCAACTATTGAAGAGTTTGAAGACACACTTGGTTACTTAGCTAAGATTCGCCCCCAAGCTGAACCTTATGGAATATGTAGGATTGTCCCTCCAGCTTGCTGGGTACCACCATGCCCTCTTAAGGAGAAAGATTTATGGGAAAATGCAAAGTTTCCCACTCGTATCCAGCAAATTGATTTGCTTCAGAACAGGGAGCCCATGAGAAAGAAAATTAGGGGAAGGAAGCGAAAACGTAGAAAGCAATCAAAGATGGGAGCAGGTAGGAGAACTGCCAAATCAGGCTCTGAAGCTAATGTTGCTTCTGAGCCTGAGGAGAAGTTTGGATTCCAATCTGGGTCAGACTTCACACTTAAAGACTTTCAGCAATATGCTAAGGTTTTTAAAGATTGCTACTTTGGATTGAATAATGCCAATGAATATGGAAAAGTTAGCGATTATAATCACTGGCAGAAACGGGAGCCCTCTGTGGAAGACATTGAAGGTGAATACTGGAGAATAATAGAGAAACCAACAGATGAGGTTGAGGTGTATTATGGAGCTGACTTGGAAACTGGATCACTTGGAAGTGGCTTTCCTAAGACATCATCTTTAACTAATAATGATTCAGATAGATATGCTGTGTCTGGCTGGAATCTGAATAACTTCCCGCGATTGCCAGGTTCTGCGTTATGTTTTGAAGGAAGTGATATCTCAGGAGTTCTAGTTCCATGGCTGTATATTGGAATGTGCTTTTCCTCATTTTGCTGGCATGTCGAGGATCATCATCTCTATTCACTTAATTATCTGCATTGGGGTGACCCAAAAGTATGGTATGGAGTACCTGGAATCCATGCTCCAGGTTTGGAAGCTGCAATGAGAAAGCACTTGCCTGATTTATTTGAAGAACAACCGAATCTACTCAATGAATTGGTGACTCAGCTATCTCCATCAATTCTTAAATCCGAGGGGGTGCCCGTACATTGCACTGTTCAGAATTCAGGTGAATTTGTTGTTACCTTTCCAAGGGCGTATCACTGTGGCTTCAATTGCGGCTTCAATTGCGCAGAGGCTGTGAATGTGGCTCCGGTTGATTGGCTTGTGCATGGCCAAAATGCTGTTGAGCTTTACAGTTTGCAGTGCCGTAAGACTTCATTGTCCCATGACAAGTTATTATTTGGATGTGCTCAAGAAGCCGTGTGTGCCCTTGCAGAGGCAACTCTTCATGAAAAAGAAAATCTAAAATATATAAAATGGAGTAGTGCTTGTGGGAAAGATGGAGTTCTTACCAAGGCAATTAAGACAAGGATAACTATGGAAAAGGAGAGGCTTGGCTGTCTTCCCACTCATTTAAAGAAGCTTAGGATGAACAGTGAGTTTGATTTGTTTGAGGAAAGAGAATGCTTCTCTTGCTTCTATGACTTGCACCTATCCGCCGTAGGTTGCAAGTGCTCCCCCGATACTTATTCATGTCTAAAGCACTCACACTTGTTTTGCTCATGTGAAGTGGACAAAAGATTTATTCTGTCTCGTTATACCATGAATGAACTAAGTACATTGGTTGAGGCATTAGAAGGAGAAACACATGCTATTCTAGTGTGGGCAAATAGAAACACTGGACTGGTATCTGCTAATCCTGAGGATGCTTGCATTTATAAACAAGATGCGGAGAGTTACAAAGGATGGAAAAGCTTAACACATTGTGCAGGAACTAATAATAAGTCAAATTCAAATATACCTAGCAGTTCTCATAGCCACATTTCTGCGGAGTTAGAGCACTCAGAGTTTCACCGTGAAATTTATAGTGCACAATATGGCACTAAAGATTGTCAAAAAGATATTGAGAATGAAGAAAAATTGGTCATGTACAATGAAGATAAGATGAAGGAAGGTTCTCTGGATTTAAATATTGATGTTATGTTTGTTGAACGTGAAAATCGTTTTCTGCATGCTGCTGAATACCATCATAATAAGAGTGTTCCATATGTTGGAAAAGTATGCTATTCAGAGGTCAGAAAGAAACAAGACAACATGGAACCTGGGGCTGGATATATAGCTTCCTCGGAGAAAGAATTTTCATCATGTTCAAGGAACGTTCAAAATTCTTCTACACTAGATGGTTATAAATTGTTTGGGGTGGACCTACAGTTGCGTTCTGATTCGAGAGAACAACTCAACGGTGTATTTAAAATAGGTGATGTTGAAACTTCCAATGCAAGTGTATCTTTGACAAACCAAAACTTCTTAATGCAGAAGATTAGTGTTTCTGTTGAGCCTGTGAATTTGGGCATTGTTATGTGTGGTAAGTTGTGGTGCAGTAGGCATGCAATATATCCAAAAGGATTCAAGAGTCGTGTTAAGTTCTTAAGCATTCTTGATCCACCAAGAATCTGTAACTATGTTTCTGAAGTCTATGATGCTGGATTTCTTGGGCCTCTTTTCAAGGTTACCATTGAAGAACATCCAAGTGAGATCTTCACAAACACCTCGGCAGACAAGTGCTGGGAGTCAGTTCTTTTGAGACTAAATCATGAAACCGAGAAGCTAAGGAATCAAGGTCAAAGAGAACTTCCTCCCTTGGAGCTTCTGAAAAGCATTAATGGTCATAAAATGTTTGGATTCCTTTCACCTTCCATTATTCAGGCTATTGAAGCTCTGGACCCCAATCATCAATGCGTCGAGTACTGGAATCACAAAGAAGTTGTCTCTGAATCTTCAGAAAGTGGCATTGATGACTGTAAGCTCAGTCACGGTTCAAGTAACTCTCTAAGTGATGTCAAAACCAGACTTCTTGGTCCTGGTTTGAGAAAGCTGGAACAAGATAGCAGCAGAAGACATTGTGATTCATTTGAAGAGATGAAATTGGTGGTAGAAGGGTTATTGAAAAAGGCGAATGCTGAAGAATTAAGTGCCATGCACAAGTTATTCAGCTCTGATGCACAGTTCAACAATTGGAGAGTGGCATTTGTAACGCTGATTGAGGAAATCCAGAAAGCTTGTGCATAA 3162 0.4077 MKQLKLAAEFHAIADSLLRHKPEMEISFESSASPQHKKISARWDPVEACRPIIDEAPVFYPTIEEFEDTLGYLAKIRPQAEPYGICRIVPPACWVPPCPLKEKDLWENAKFPTRIQQIDLLQNREPMRKKIRGRKRKRRKQSKMGAGRRTAKSGSEANVASEPEEKFGFQSGSDFTLKDFQQYAKVFKDCYFGLNNANEYGKVSDYNHWQKREPSVEDIEGEYWRIIEKPTDEVEVYYGADLETGSLGSGFPKTSSLTNNDSDRYAVSGWNLNNFPRLPGSALCFEGSDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGIHAPGLEAAMRKHLPDLFEEQPNLLNELVTQLSPSILKSEGVPVHCTVQNSGEFVVTFPRAYHCGFNCGFNCAEAVNVAPVDWLVHGQNAVELYSLQCRKTSLSHDKLLFGCAQEAVCALAEATLHEKENLKYIKWSSACGKDGVLTKAIKTRITMEKERLGCLPTHLKKLRMNSEFDLFEERECFSCFYDLHLSAVGCKCSPDTYSCLKHSHLFCSCEVDKRFILSRYTMNELSTLVEALEGETHAILVWANRNTGLVSANPEDACIYKQDAESYKGWKSLTHCAGTNNKSNSNIPSSSHSHISAELEHSEFHREIYSAQYGTKDCQKDIENEEKLVMYNEDKMKEGSLDLNIDVMFVERENRFLHAAEYHHNKSVPYVGKVCYSEVRKKQDNMEPGAGYIASSEKEFSSCSRNVQNSSTLDGYKLFGVDLQLRSDSREQLNGVFKIGDVETSNASVSLTNQNFLMQKISVSVEPVNLGIVMCGKLWCSRHAIYPKGFKSRVKFLSILDPPRICNYVSEVYDAGFLGPLFKVTIEEHPSEIFTNTSADKCWESVLLRLNHETEKLRNQGQRELPPLELLKSINGHKMFGFLSPSIIQAIEALDPNHQCVEYWNHKEVVSESSESGIDDCKLSHGSSNSLSDVKTRLLGPGLRKLEQDSSRRHCDSFEEMKLVVEGLLKKANAEELSAMHKLFSSDAQFNNWRVAFVTLIEEIQKACA 1053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2126g00007 1053 Pfam JmjC domain, hydroxylase 297 413 IPR003347 -
Vium2126g00007 1053 Pfam F/Y-rich N-terminus 812 856 IPR003888 GO:0005634
Vium2126g00007 1053 Pfam C5HC2 zinc finger 520 572 IPR004198 -
Vium2126g00007 1053 Pfam F/Y rich C-terminus 863 950 IPR003889 GO:0005634
Vium2126g00007 1053 SMART JmjN_1 55 96 IPR003349 -
Vium2126g00007 1053 SMART cupin_9 264 430 IPR003347 -
Vium2126g00007 1053 MobiDBLite consensus disorder prediction 128 146 - -
Vium2126g00007 1053 ProSiteProfiles FYR domain FYRN motif profile. 801 859 IPR003888 GO:0005634
Vium2126g00007 1053 SMART fyrc_3 865 960 IPR003889 GO:0005634
Vium2126g00007 1053 SMART fyrn_3 815 859 IPR003888 GO:0005634
Vium2126g00007 1053 MobiDBLite consensus disorder prediction 126 164 - -
Vium2126g00007 1053 FunFam Putative lysine-specific demethylase JMJ16 807 945 - -
Vium2126g00007 1053 Gene3D - 807 945 - -
Vium2126g00007 1053 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Vium2126g00007 1053 PANTHER LYSINE-SPECIFIC DEMETHYLASE 51 840 - -
Vium2126g00007 1053 Pfam jmjN domain 57 90 IPR003349 -
Vium2126g00007 1053 Gene3D Cupin 41 414 - -
Vium2126g00007 1053 ProSiteProfiles JmjC domain profile. 264 430 IPR003347 -
Vium2126g00007 1053 ProSiteProfiles FYR domain FYRC motif profile. 861 951 IPR003889 GO:0005634
Vium2126g00007 1053 SUPERFAMILY Clavaminate synthase-like 260 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2126g00007 Vium-Chr2126 101614 109970 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2126g00007 763 987 JUMONJI Transcription Factor Family AT1G30810 48.000 2.67e-53 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vium2126g00007 JmjC 1.4e-43 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2126g00007 K11446 - gmx:100784581 1766.51