Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2126g00006 ATGGCTTTGTCTTGTCAATTACTTGTTCACTTTGGCTTATTGATTATGCTCCTCCATCACCTTCAGCTACACTATCTCTTCGTTGGTGTATCAGCAGCCACTTTAAGCATCACCACTGACACAGAAGCCTTGATCTCATTCAAGTCTCAACTGAAAAATGACACTCTTATTCCCTTATCTTCTTGGAACCAAAGTTCATCCCCTTGCAATTGGACTGGTGTGCAATGTGACAGCCTTGGCCAAAGGGTAATTTCCTTGGAACTTCCAAGCTTGGGACTCTCAGGTCAATTAAGTCCTTATATCTGTAACCTCTCCTCTCTTCAGTCCCTCCAATTGCAGGATAACCAACTCACTGGACTCATTCCTGATCAAATTGGCAATCTATTCAGTTTGAGAGTTCTAAATATTAGCTCTAACATGTTAGAAGGAAATCTTCCTTCCAACATCACCCGCTTGAATCAGCTCCAGATTCTTGATCTATCCTCAAACAAGATTGTCAGCAAGATTCCTCAAGACATTGGCAGCTTGAAAAAGCTTGAGGTTTTGAAGCTGGGAAAGAATAGCCTCTATGGTGCAATCCCAGCTTCTCTAGGAAATATTTCTTCTCTCAAAAATATCAGTTTTGGCACCAACTTTCTCACTGGTTCGATTCCCAGTGACTTGGGTAGGCTTCATGATTTGATTGAGCTTGATCTCATTCTTAACAATCTCAATGGGACCGTTCCACCTTCTGTGTATAACTTATCTTCCCTCGTTAACTTTGCCTTAGCTTCAAACTCTCTGGGGGGTGAGATTCCTCAGGATGTTGGTCTCAAACTTCCAAAACTCATAGTGTTCAACATCTGCTTCAATTATTTCACAGGTGGAATTCCAGGGTCTTTGCACAACCTCACCAACATTCAGGTCATTCGCATGGCTTCCAACTTTTTGGAAGGAACAGTGCCACCTGGTTTAGGAAATCTCCCATTTCTTCGCATGTATAATATTGGTTATAATAGGATAGTGAGTTCAGGTGTTGGAGGTTTAGACTTCATTACCTCTTTGACAAACAGTACTCGACTCAACTTTCTGGCAATTGATGGAAATATGCTGGAAGGTGTGATTCCCGAAACCGTTGGCAATCTCTCCAAGGACCTGTCAACGTTATACATGGGACAGAATCGTTTCAATGGAAGCATACCCCGCTCCATTGGTCTTCTTAGTGGCTTGAAGTTGTTAAACATAAGCCACAATTCAATATCTGGAGAAATCCCACATGAGTTAGGCCAGTTAGCGGAACTACAAGAACTATCTCTAGCTGGAAATGAGATATCAGGGGTTATTCCAGATTCCCTTGGTAATCTCCTCAAGTTAAACCTGATTGATTTGTCAAGAAACAAACTTGTGGGGAGAATACCTACCAGTGTTGGGAATTTGCAAAGTCTGCTTTACATGGACTTATCAAGCAACCAACTCAATGGAAGCATTCCTGTGGAAATCCTCAATCTCCCAACTTTGAGCAATGTTTTGAACTTGTCAATGAACTCTTTGAGTGGAGCAATACCTCAAATAGGAAGATTGAGTGGTGTTGCCTCCATTGACTTTTCTAGCAATCAATTGGATGGTGACATTCCCAGTTCATTCAGCAATTGTCTCAGCTTGGAAAATTTGTTTTTGAACCGGAATCAGCTTTCGGGTTCCATTCCAAAGGCTCTTGGAGAAGTGAGAGCCTTGGAAACTTTGGACCTATCCACCAACCGACTGTCTGGAGCCATTCCTGTTGAACTTCAAAACTTACAGGTTCTTAGGTTCTTAAACCTCTCGTACAATGATTTAGAAGGAGCCGTTCCAAGTGGTGGAGTTTTCCAAAATCTCTCTGCTGTACATTTAGAAGGCAATGAAAATCTCTGCTTGCAAGCCCCATGTGTAAATCGTGGCGAAGGAAGAAGAAATGTGAGATATTACATCATCATAGCCGTTGCTGTAGCATTGGTACTGTGTCTCACAGTTGGCTCAATACTATATATAAGGAGCAGAAAGGTGAAGGTAGCAACATTATCATCATCACCATCTGAACAGCTAAAACCTCTTGCACCAATGATCTCTTATGACGAGCTTCGTTTGGCAACTGAGGAGTTCAACCAGGAAAACTTACTAGGAGTTGGGAGCTTTGGCTCAGTTTACAAAGGCAATCTAAGTGATGGAACTACTGTTGCAGTGAAAATTCTTGACACCCTAAGAACTGGTTCTCTAAAGAGTTTCTTTGCAGAATGTGAGGCTATGAAGAACTCGAGGCATCGAAATCTGGTTAAGCTTATCACATCATGCTCCAGTGTTGACTTCAAAAACAATGACTTTTGGGCTCTGGTGTATGAGTATATGTGCAATGGTAGCTTGGAAGATTGGATTAAGGGGAAGAGAAAGCATGAAAATGGAAATGGATTGAACCTTATGGAGAGATTGAACATAGCAATAGATGTTGCGTGTGCACTGGACTACCTGCACAATGATAGTGAAATCCCAGTTGTGCACTGTGATTTGAAGCCTAGCAACATTCTCTTGAACGAAGACATGACTGCAAAGGTTGGAGACTTTGGATTGGCCAGGTTGCTTGTTCAAAGATCAACCAATCAAGTTTCCATTAGCTCCACTCATGCTCTTAGGGGCTCTATTGGTTACATACCTCCAGAATATGGATGGGGAGAGAAAGTAAGTGCAGCTGGAGATGTGTATAGTTTTGGTATAGTGTTGCTGGAGCTGTTCTCTGGGAAAAGTCCAACTGATGAATGCTTCACTGGAGGCCTAAGCATAAGAAGATGGATGCATTCAGCATTCAAAGAGAAGACAATGGAAGCCATTGACCCCGAGTTGGTGTCCCTCATTTTGAATGACGACCCTTCAGAGGGACCAAATAACGTACAAGTGTATTGTGTGGAAGCAATTGTAGGAGTAGCCATATCTTGCACTGCAGACAACCCAGATGAACGCATTGGCATTAGAGATGCTGTTAGCTAA 2994 0.4228 MALSCQLLVHFGLLIMLLHHLQLHYLFVGVSAATLSITTDTEALISFKSQLKNDTLIPLSSWNQSSSPCNWTGVQCDSLGQRVISLELPSLGLSGQLSPYICNLSSLQSLQLQDNQLTGLIPDQIGNLFSLRVLNISSNMLEGNLPSNITRLNQLQILDLSSNKIVSKIPQDIGSLKKLEVLKLGKNSLYGAIPASLGNISSLKNISFGTNFLTGSIPSDLGRLHDLIELDLILNNLNGTVPPSVYNLSSLVNFALASNSLGGEIPQDVGLKLPKLIVFNICFNYFTGGIPGSLHNLTNIQVIRMASNFLEGTVPPGLGNLPFLRMYNIGYNRIVSSGVGGLDFITSLTNSTRLNFLAIDGNMLEGVIPETVGNLSKDLSTLYMGQNRFNGSIPRSIGLLSGLKLLNISHNSISGEIPHELGQLAELQELSLAGNEISGVIPDSLGNLLKLNLIDLSRNKLVGRIPTSVGNLQSLLYMDLSSNQLNGSIPVEILNLPTLSNVLNLSMNSLSGAIPQIGRLSGVASIDFSSNQLDGDIPSSFSNCLSLENLFLNRNQLSGSIPKALGEVRALETLDLSTNRLSGAIPVELQNLQVLRFLNLSYNDLEGAVPSGGVFQNLSAVHLEGNENLCLQAPCVNRGEGRRNVRYYIIIAVAVALVLCLTVGSILYIRSRKVKVATLSSSPSEQLKPLAPMISYDELRLATEEFNQENLLGVGSFGSVYKGNLSDGTTVAVKILDTLRTGSLKSFFAECEAMKNSRHRNLVKLITSCSSVDFKNNDFWALVYEYMCNGSLEDWIKGKRKHENGNGLNLMERLNIAIDVACALDYLHNDSEIPVVHCDLKPSNILLNEDMTAKVGDFGLARLLVQRSTNQVSISSTHALRGSIGYIPPEYGWGEKVSAAGDVYSFGIVLLELFSGKSPTDECFTGGLSIRRWMHSAFKEKTMEAIDPELVSLILNDDPSEGPNNVQVYCVEAIVGVAISCTADNPDERIGIRDAVS 997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2126g00006 997 FunFam LRR receptor-like serine/threonine-protein kinase EFR 677 786 - -
Vium2126g00006 997 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 787 997 - -
Vium2126g00006 997 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 234 341 - -
Vium2126g00006 997 Gene3D Transferase(Phosphotransferase) domain 1 787 997 - -
Vium2126g00006 997 Pfam Leucine rich repeat N-terminal domain 39 77 IPR013210 -
Vium2126g00006 997 Pfam Leucine rich repeat 426 485 IPR001611 GO:0005515
Vium2126g00006 997 Pfam Leucine rich repeat 106 165 IPR001611 GO:0005515
Vium2126g00006 997 Pfam Leucine rich repeat 546 605 IPR001611 GO:0005515
Vium2126g00006 997 FunFam Receptor protein kinase CLAVATA1 36 194 - -
Vium2126g00006 997 ProSitePatterns Serine/Threonine protein kinases active-site signature. 835 847 IPR008271 GO:0004672|GO:0006468
Vium2126g00006 997 FunFam Inactive leucine-rich repeat receptor-like protein kinase 346 637 - -
Vium2126g00006 997 SUPERFAMILY Protein kinase-like (PK-like) 683 996 IPR011009 -
Vium2126g00006 997 PANTHER OS04G0122200 PROTEIN 241 986 - -
Vium2126g00006 997 Pfam Protein kinase domain 707 993 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2126g00006 997 ProSiteProfiles Leucine-rich repeat profile. 154 176 IPR001611 GO:0005515
Vium2126g00006 997 SMART serkin_6 706 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2126g00006 997 SMART LRR_typ_2 568 591 IPR003591 -
Vium2126g00006 997 SMART LRR_typ_2 472 496 IPR003591 -
Vium2126g00006 997 SMART LRR_typ_2 152 176 IPR003591 -
Vium2126g00006 997 SMART LRR_typ_2 592 617 IPR003591 -
Vium2126g00006 997 SMART LRR_typ_2 424 447 IPR003591 -
Vium2126g00006 997 SMART LRR_typ_2 104 127 IPR003591 -
Vium2126g00006 997 SUPERFAMILY L domain-like 38 334 - -
Vium2126g00006 997 ProSiteProfiles Protein kinase domain profile. 706 997 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2126g00006 997 SUPERFAMILY L domain-like 379 630 - -
Vium2126g00006 997 Gene3D Ribonuclease Inhibitor 93 339 IPR032675 -
Vium2126g00006 997 Gene3D Ribonuclease Inhibitor 30 92 IPR032675 -
Vium2126g00006 997 Gene3D Ribonuclease Inhibitor 340 637 IPR032675 -
Vium2126g00006 997 CDD STKc_IRAK 712 989 - -
Vium2126g00006 997 Gene3D Phosphorylase Kinase; domain 1 688 786 - -
Vium2126g00006 997 ProSitePatterns Protein kinases ATP-binding region signature. 712 734 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2126g00006 Vium-Chr2126 85180 88658 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2126g00006 39 991 Receptor kinase-like Gene Family AT3G47570 42.111 0.0 704
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vium2126g00006 Pkinase 7.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2126g00006 - - gmx:102664710 1583.93