Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2126g00004 ATGGATCTGGCTCGCAAGTATGCTTTTGGAAAGATGCTTGTAATTGGATCACAAGCACCATTTAAGGTGAAGGGGTTGTGGCTTTTCCGCGGACAAGAGATTCCACAATTTGTGATTGACGAGTGTTATGATATGGAGCTGTACAAGTGGACCAAGATGGCAAAAAGGAAGAGTTCAACATGGAGAAGGTTGATGTTGTTTGTGTTTGGATTGAATATGATGGAGAGCATGTTTTTTGGTTTCTCTGCATCAATAGATAAGAGGAAAGCAAGTGCTCATTATATTCTGGGGTGGAGTTTTGCGTTGAATGGGGTTGCCCCTCCATTAGATTATGCACTACTTCCAAAGCCACCACCAAAGGAGAAACACTCACAGTCTTTTCCTTGGATCAAGGTTATAATTGGCATGTTGTCTGCTTTGACATTTATCTTGTTGTGCCTTTTTCTTTATGTGACACTCTATAAGAGATACATGGTATTTGAAACTCTTGAGGACTGGGAAATGGATTGTCCTCACAGGTTCAGATACAGAGATCTTCACCTAGCAACAAAGGGGTTCGTAGAGAGCCAACTAATTGGAGTTGGAGGCTTTGGTTCTGTGTACAAAGGGGTGTTACCCAGAACAGGAACTGAGGTTGCTGTTAAAAGGATCCTGAGAACTCCAGCCAAAGGAATGAGGGAATTTGCAGCTGAGATTGAAAGCTTAGGAAGATTGAGGCACAAGAATTTGGTGAACCTTCAAGGGTGGTGCAAGCACAAGAATGATCTCCTTTTGGTTTATGATTACATTCCAAATGAGAGCCTTGACTCTCTCCTATTCAGCAGAAGCTTTGTTTTGGATTGGGATCAAAGATTCAGAATTCTCAAAGGTGTAGGTGCTGGGCTGTTGTATCTGCATGAAGAATGGGAGCAAGTGGTGATCCATAAAGATGTGAAATCTAGCAATATTAGTGCTTGA 957 0.4201 MDLARKYAFGKMLVIGSQAPFKVKGLWLFRGQEIPQFVIDECYDMELYKWTKMAKRKSSTWRRLMLFVFGLNMMESMFFGFSASIDKRKASAHYILGWSFALNGVAPPLDYALLPKPPPKEKHSQSFPWIKVIIGMLSALTFILLCLFLYVTLYKRYMVFETLEDWEMDCPHRFRYRDLHLATKGFVESQLIGVGGFGSVYKGVLPRTGTEVAVKRILRTPAKGMREFAAEIESLGRLRHKNLVNLQGWCKHKNDLLLVYDYIPNESLDSLLFSRSFVLDWDQRFRILKGVGAGLLYLHEEWEQVVIHKDVKSSNISA 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2126g00004 318 ProSitePatterns Protein kinases ATP-binding region signature. 192 223 IPR017441 GO:0005524
Vium2126g00004 318 FunFam serine/threonine-protein kinase PBS1-like 157 262 - -
Vium2126g00004 318 Pfam Elongation factor 1 gamma, conserved domain 2 33 IPR001662 GO:0003746|GO:0006414
Vium2126g00004 318 PANTHER - 65 316 - -
Vium2126g00004 318 Gene3D Transferase(Phosphotransferase) domain 1 263 317 - -
Vium2126g00004 318 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 1 67 IPR036433 GO:0003746|GO:0006414
Vium2126g00004 318 SUPERFAMILY Concanavalin A-like lectins/glucanases 74 208 IPR013320 -
Vium2126g00004 318 SUPERFAMILY Protein kinase-like (PK-like) 172 316 IPR011009 -
Vium2126g00004 318 ProSiteProfiles Protein kinase domain profile. 186 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2126g00004 318 Pfam Protein kinase domain 187 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2126g00004 318 Gene3D Phosphorylase Kinase; domain 1 171 262 - -
Vium2126g00004 318 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 1 52 IPR001662 GO:0003746|GO:0006414
Vium2126g00004 318 SUPERFAMILY eEF1-gamma domain 1 57 IPR036433 GO:0003746|GO:0006414
Vium2126g00004 318 SMART serkin_6 186 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2126g00004 Vium-Chr2126 58906 60044 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2126g00004 73 316 Receptor kinase-like Gene Family AT5G01560 53.543 1.27e-86 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vium2126g00004 Pkinase 3.7e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2126g00004 - - vum:124829217 652.899