Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2126g00003 ATGTATGGCATTTTCCCGTGTTTCTTCGTTCTTCTACTGTTTCTTCGTTCTTCTTCTATCGCCGCTGCATCCAAGAGCTTCGCTGAGTCCAGCTTTCTTCTTCCTTTGCATCTCCACCATTGTTGTCGCTGCTTGCCGCGCCTCCCCCGCCGCTGCTCGTCGCGCCTCCGTGGCGGTGCTCGCCCTGCCTCCGTCGTGTTTGTGACCGCCTTCTTCACTCCTCCCTTGCTCGTTCATACCGGTTTGTACCTTCGTCGCGGTCTTACCTTCGTTGCGCCGCGTTCTCCACCACTGCTCCTCTCCCTTGCTCGGGTTAAGCAAACTGACGTTGTTCCACCTGTTCAATCTGCGAAGAAGCCTGCCCAGCCTAAGGAGTCGAAGCCCAAACCTAAGGATGAGCCGAAGAAAGTGGCTAAGCCAGAGCCAGAGAAGCCCAAAGAAGAGGCAGAAGATGCAGAAGAGGAGGCACCCAAGCCCAAACCCAAAAATCCCCTTGATCTTCTTCCTCCAAGCAAGATGATATTGGATGAGTGGAAAAGACTCTACTCAAACACCAAGACCAACTTCTACGAGGTTGCACTCAAAGGTATTATATGGCTTTCTGTGTTTTAA 612 0.5245 MYGIFPCFFVLLLFLRSSSIAAASKSFAESSFLLPLHLHHCCRCLPRLPRRCSSRLRGGARPASVVFVTAFFTPPLLVHTGLYLRRGLTFVAPRSPPLLLSLARVKQTDVVPPVQSAKKPAQPKESKPKPKDEPKKVAKPEPEKPKEEAEDAEEEAPKPKPKNPLDLLPPSKMILDEWKRLYSNTKTNFYEVALKGIIWLSVF 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2126g00003 203 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 161 203 IPR001662 GO:0003746|GO:0006414
Vium2126g00003 203 MobiDBLite consensus disorder prediction 111 169 - -
Vium2126g00003 203 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 161 199 IPR036433 GO:0003746|GO:0006414
Vium2126g00003 203 SUPERFAMILY eEF1-gamma domain 161 187 IPR036433 GO:0003746|GO:0006414
Vium2126g00003 203 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 104 197 IPR044628 GO:0004364
Vium2126g00003 203 Pfam Elongation factor 1 gamma, conserved domain 160 188 IPR001662 GO:0003746|GO:0006414
Vium2126g00003 203 MobiDBLite consensus disorder prediction 122 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2126g00003 Vium-Chr2126 58049 58817 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2126g00003 102 197 Eukaryotic Initiation Factors Gene Family AT1G57720 59.375 6.30e-17 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2126g00003 K03233 - vum:124829216 249.21