Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2123g00001 ATGGCGACGAGAAATCGCACTCTGCTTTTCAGAAAATACAGAGATGCGTTGAAGGCTGTTCGCATTCCCTCCATCTCTTCGCCGCAGTCCACCTCCTCCCGCGGTGGCGGTGGCCCTGTCATCGAATTGGTCAGCACTTCGCTTCTCAATCCCAATCGCTCTTACGCTCCGCTTAGTACCGATGATCCTGGTAATTCGAGTCGTGGTCCAAATGCAGTCAATTTGGGGCTACCTCCTGCGTGGGTGGATTTATGGGAAGAAATATCAGCAAATGTGCAACGTGCACGCACAAAAATGGCAGAGTTGGCCAAGGCTCATGCAAAGGCTTTGATGCCATCATTTGGAGATGGAAAAGAAGATCAACATGCTATTGAGACTCTAACACACGAGATAACTGACTTAATAAAGAGGTCTGAGAAGAGACTCAGAAGACTTTCTGCTTCTGGGCCTTCTGAGGATTCCAATGTCAGAAAAAACGTGCAGCGATCTCTTGCTACTGACCTTCAGAACCTCTCTGTTGAGCTACGCAAGAAACAATCAACTTATTTAAAGCGCCTCAGACTACAGAAAGAGGGTCAAGATGGAGTTGATCTAGAGATCAATTTGAATGGAGGTAAATCAAGATTTGAAGATGATGATTTAGATAATATGGTATTTAATGAGCATCAAATGGCCAAGCTGAAGAAAAGTGAAGCATTCACAGTAGAACGAGAAAAAGAGATCCAGCAGGTTGTGGAATCTGTGAACGAGCTTGCTCAGATCATGAAGGATTTATCAGTACTAGTCATAGACCAGGGAACCATCGTCGATAGAATAGACTACAACATTCAGAATGTTGCAACCACAGTCGAGGATGGGCTTAAACAGCTGCAGAAGGCAGAGAGAACTCAGAAAAAAGGGGGTATGGTAATGTGTGCTACTGTGCTTGTCATCATGTGCTTCGTAATGTTGGTTCTCTTAATCATTAAGGAAATTATTTTGTGA 984 0.4431 MATRNRTLLFRKYRDALKAVRIPSISSPQSTSSRGGGGPVIELVSTSLLNPNRSYAPLSTDDPGNSSRGPNAVNLGLPPAWVDLWEEISANVQRARTKMAELAKAHAKALMPSFGDGKEDQHAIETLTHEITDLIKRSEKRLRRLSASGPSEDSNVRKNVQRSLATDLQNLSVELRKKQSTYLKRLRLQKEGQDGVDLEINLNGGKSRFEDDDLDNMVFNEHQMAKLKKSEAFTVEREKEIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVEDGLKQLQKAERTQKKGGMVMCATVLVIMCFVMLVLLIIKEIIL 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2123g00001 327 Coils Coil 322 327 - -
Vium2123g00001 327 CDD SNARE_syntaxin16 236 292 - -
Vium2123g00001 327 SMART tSNARE_6 226 293 IPR000727 -
Vium2123g00001 327 ProSitePatterns Syntaxin / epimorphin family signature. 237 276 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vium2123g00001 327 SUPERFAMILY t-snare proteins 77 286 IPR010989 GO:0016020|GO:0016192
Vium2123g00001 327 FunFam Syntaxin-43 78 285 - -
Vium2123g00001 327 SMART SynN_4 72 187 IPR006011 GO:0016020
Vium2123g00001 327 Gene3D - 78 285 - -
Vium2123g00001 327 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 231 293 IPR000727 -
Vium2123g00001 327 PANTHER SYNTAXIN 86 312 IPR045242 -
Vium2123g00001 327 MobiDBLite consensus disorder prediction 52 72 - -
Vium2123g00001 327 Pfam SNARE domain 267 319 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2123g00001 Vium-Chr2123 1830 13026 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2123g00001 1 316 SNARE and Associated Proteins AT3G05710 76.543 0.0 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2123g00001 K08489 - gmx:100796741 564.303