Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2121g00011 ATGCGGGAAGCAGATGTTCGGTTCCCTTTCGGATTCTCCGAAGGTTGTGAAATCATACTAAACTGTTCCGACAACAAAGTTCGTCTTCACGAATTTCTGGTCCAAAACATTACCAACAGCAACATACTCGTCAATCTCCCTGCAAAATGCAACCGCAGCATGGAATCCATCGAGCCACTTTTCGGTAACAATTTTGCTCCCTCTGTTAACAACAGCTTTCTGGTGCAAGATTGCAGCGATGCGTCTCGAGGGTGCGCTTTTCCGGCTTCGAATTTTGTGGAAACCTGCGATAAGACAAGTGGTAATATCAGTTGCTTTTCGAAACAAGATGAGGCGGGTGTTCTGACGTACAAAGATTTGAAAGAAACTAAGTGTAATTACTTGTTCTCTGCGATTTATTTTGGGCAGAGCAAGGAGATTACGCTGCAGTTTCAGGTGGTCGAGTTGGCGTGGTGGCTTCAAGGACAGTGTGATGAATGTTCTGAAAACGCTACCTGCTCAACGGTCCAAAGAGGGTTTCGGTGCCAGTGTATCCATGGTTTTCACGGCGACGGCTTCATAAATGGCACCGGTTGCCGGAAAACTTCGGCTTCAAGTTGCAGTGCATCGACACTGGCTTCCGGAGGATGTGGAAAAGCAACCAAAATCGGCGTTGCTGTTGGAGCGAGCATAGCTGGAGCTTTGGTGGTGGCTGGTCTATTTCTTCTATGCTACTGTGCTAGGCGCCGCTCTATTTGGTTGGGAAAACATACCAGAGTAAAGCGGCAATTACGTGAAGCTGCAGGAAACTCAAGTATACCTTTCTATCCCTACAAAGAAGTAGAAAAAGCCACAAATTCTTTCTCTGAGAAACACAGGCTGGGAACCGGGGCATTTGGTACAGTTTACGCCGGAAAACTGCACAGTGATGAATGGGTTGCTATCAAGAAGTTAAGGCAAAGAGACACCAACAGTGCAGACCAAGTCATGAATGAGATCAAGCTCCTTTCTTCAGTGAGTCATCCAAATTTAGTTCGACTCTTAGGTTGCTGCATAGAGAAGGGAGAGCAGATCCTTGTTTATGAATATATGCAAAATGGAACACTTTCTCAGCACTTGCAAAGAGAGAGGAGTGAAGGACTGCCGTGGACAGTAAGACTTACCATAGCTACTGAAACTGCTAATGCTATAGCATATCTCCATTCCGCAATTCACCCCCCAATTTACCACAGAGACATAAAATCTAGTAATATACTTTTGGATTATCACTTCAAATCTAAGATAGCTGATTTTGGGCTTTCTAGGCTTGGCATGACAGAAACATCTCATATCTCAACCGCTCCACAGGGGACTCCTGGTTATGTGGATCCCCAATACCACCAGAACTTCCATCTTTCTGATAAAAGTGATGTGTACAGTTTTGGAGTGGTCTTGGTAGAGATAATAACTGCCATGAAAGCGGTTGATTTTTCTCGACCTAGGAGTGAGGTTAACTTAGCTGCACTTGCCGTAGATAGGATTAGGAGGGGTGCTGTAGATGAGATCATAGACCCCTTCCTTGAACCACACAGAGATGCTTGGACACTGTATTCTATTCATAAGGTAGCTGAGCTTGCATTTAGATGCCTTGCTTTTCACAGTGACATGAGGCCTACTATGATGGAAGTGGCAGAGGAGCTAGAACACATTAAACGCAGTGGATGGGCAACTATGGAGGAAACTGCCATGACTTCATCGAATGGATCCACTTGTTCATCACCTCGCAGTGGAAGTGAAAAGTCATTGAGTGGTATCAAAAAGGCTGGCCAAGGGAGTGCGAGATTGATAGTTCCCCAGAAGATTGAGAGATTTTTTCATTCTGTGGAGGTGAAAGACAGCTCTCCTGTATCAGTACATGATCCTATTCATTGGTCGAGTGGACACAGCTCACTTTCGTCAAACAGCTTGTTAGTAAATGTCATCCCTTGA 1947 0.451 MREADVRFPFGFSEGCEIILNCSDNKVRLHEFLVQNITNSNILVNLPAKCNRSMESIEPLFGNNFAPSVNNSFLVQDCSDASRGCAFPASNFVETCDKTSGNISCFSKQDEAGVLTYKDLKETKCNYLFSAIYFGQSKEITLQFQVVELAWWLQGQCDECSENATCSTVQRGFRCQCIHGFHGDGFINGTGCRKTSASSCSASTLASGGCGKATKIGVAVGASIAGALVVAGLFLLCYCARRRSIWLGKHTRVKRQLREAAGNSSIPFYPYKEVEKATNSFSEKHRLGTGAFGTVYAGKLHSDEWVAIKKLRQRDTNSADQVMNEIKLLSSVSHPNLVRLLGCCIEKGEQILVYEYMQNGTLSQHLQRERSEGLPWTVRLTIATETANAIAYLHSAIHPPIYHRDIKSSNILLDYHFKSKIADFGLSRLGMTETSHISTAPQGTPGYVDPQYHQNFHLSDKSDVYSFGVVLVEIITAMKAVDFSRPRSEVNLAALAVDRIRRGAVDEIIDPFLEPHRDAWTLYSIHKVAELAFRCLAFHSDMRPTMMEVAEELEHIKRSGWATMEETAMTSSNGSTCSSPRSGSEKSLSGIKKAGQGSARLIVPQKIERFFHSVEVKDSSPVSVHDPIHWSSGHSSLSSNSLLVNVIP 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2121g00011 648 MobiDBLite consensus disorder prediction 570 590 - -
Vium2121g00011 648 FunFam Wall-associated receptor kinase-like 20 357 566 - -
Vium2121g00011 648 FunFam Wall-associated receptor kinase-like 14 249 356 - -
Vium2121g00011 648 CDD EGF 160 185 - -
Vium2121g00011 648 Gene3D Laminin 150 193 - -
Vium2121g00011 648 Gene3D Transferase(Phosphotransferase) domain 1 357 576 - -
Vium2121g00011 648 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 66 592 IPR044652 GO:0004672
Vium2121g00011 648 ProSiteProfiles Protein kinase domain profile. 281 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2121g00011 648 Pfam Protein tyrosine and serine/threonine kinase 284 553 IPR001245 GO:0004672|GO:0006468
Vium2121g00011 648 ProSitePatterns Serine/Threonine protein kinases active-site signature. 401 413 IPR008271 GO:0004672|GO:0006468
Vium2121g00011 648 Gene3D Phosphorylase Kinase; domain 1 252 356 - -
Vium2121g00011 648 ProSitePatterns Protein kinases ATP-binding region signature. 287 310 IPR017441 GO:0005524
Vium2121g00011 648 SMART serkin_6 281 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2121g00011 648 SUPERFAMILY Protein kinase-like (PK-like) 261 554 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2121g00011 Vium-Chr2121 55577 59649 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2121g00011 8 646 Receptor kinase-like Gene Family AT2G23450 57.164 0.0 720
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vium2121g00011 PK_Tyr_Ser-Thr 1.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2121g00011 - - vum:124829194 1263.83