Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium211g00012 ATGACGATCGTGGCCTTGTTACTGAGTTTTCTGGTAGCGGTGACGGTGGTGGTGTCGCCGTCGCACGCGGCTTCCAGTGGTCCCCACATTGCTGACGTCAACTTGCTCTTGCCGCCAAAAATGACTTATCCAGTTGATTACCGGCTCCAAGGAAGCGACGGCTGCTTCCAATGGTCATGGGATCATCATGACATTCTGTCTGTTGAGCCTGAGTATAATTCAACCAGCAAGTGCTCAACTAGTGCAAGAATAAGATCCATTTCCCCTTACAGTGTGCGGAAGGAAACTGCTGTTTATGCTGCAGACTTGAAAACTGGGATTGTGATTCGCTGCAAAGTCTTTATTGACAACATATCACGAATACAGATATTTCATAATTCTATTAAACTTGATTTAGAGGGGCTTGCCACACTACGTGTTCGAGCCTTTGATAATGAAGAAAACGTATTTTCTTCATTAGTTGGCTTACAGTTTATGTGGAGCCTTATGCCTGAAGCCAATGGATTACCTCATCACCTTGTTAATGTTCCACTAAAGGATTCTCCCCTTAGTGATTGTGGGGGATTATGTGGTGACTTAGATATACAAATAAAGCTTGAAGACAATGGTGTATTTTCAGATCTTTTTGTAGTAAAGGGAATTGAGATTGGTCATGAGATTGTGTCAGTGCGTTTGCTTGAGACACAGTTAAAGAATTTAGCTGATGAGATTGTTCTTACTGTTGCTGAAGCTATGTCCCTCGATCCTCCTTCACCAGTTCTTGTACTTGTTGGTGCAGTCATTCCCTACACCCTTAAAGTCATCCGTGGAAATGTTCCTGAAGTGGTTACTTTACCCTCACCACATCACCAATGGTCTGTCTCAAATGCTTCGGTTGCTCAGGTCGACTCAAAAACAGGGTTAGCATACGCATGGAACTTGGGCATGACAGCTGTTATTGTTGAAGATACTAGGATTGCTGGCCATGAACAAGTGTCTTCATTGAATGTGGTCCTACCATCTTCTCTATGTTTGTATATATCACCTTTATCTAGTTCTGGTGATCCAGTGGAAGGAGTAAAATCTAACCCTCTGATGACCCGGTGGTATGTTATATCTGGCCATCAATATCTTATCCAGATAAAGGTTTTTGCACAGGATCATCCTGCACAAGAAATTTATATTACAGAGAATGATGATGTTAAGGTTTATGATAATGATTCTGATCAATACTGGAAAACATTTTTTGTTTCAAATGATATTGCTGTTAAACACGGCTGGCGGAATTCTAAAATCTTGGAGGCTTATTCACCAGGACTTGGAAAATTGACAGCTTCTTTGAGCTACCCTGGTGGGGCTGATGACAAAAAGGAGATTATCAAGGCTGTGCAAGAAATAATGGTTTGTGATAAAGTAAAGTTCACCTTGGACAATGATAGTGGAATGATCTTATTACCATGGTCAACTGGTGTTTATCAGGAGGTGGAGTTAAAGGCTACAGGAGGCTGTGCAAAAACTGTGAGTGACTTCAGATGGCTATCTTCAGACTCGTCCACAGTATCTGTAACAGCTTTTGGTATTGTCCAGGCAAAAAAACCTGGTAAAGCTACTATCAAAGTGTTATCTGTATATGATTCACTAAATTATGATGAGGTCCTTGTTGAAGTCTCCATTCCTTCTTCTATGGTTGTGCTTCACAATTTTCCTGTAGAAACTGTTGTTGGATCATATCTTAAAGCTGCTGTGACAATGAAAGCAGCAAATGGTTCCTTTTTCTATGTATGTGATGCCTTTAATTCATTGATAAAGTGGAAGTCTGGAAGTGAGTCTTTTGTAATTGTCAATGCAACTCAGGAGTTGTTATACTTGAAAACTGAGCCAAATACTCAGCTCCGATCATCAGTCAATGGTTCTCCCTGTTCCTGGACATATGTTTTGGCTTCTCATCCTGGTCAAGCTGTGATCCAGGCCATTTTTTCCAAAGAAGATCACCACCACAGTCATAGTCCTGTTGGACTAAAAGCATCCTTACGCATTGCGGCATATCGACCCCTTATTGTACGTCAGGCAGGTGATGGAAACCAATTTGGTGGTTACTGGATTGATTCGGCTCAAGCAGAAAATGACAAGCAGTCACATGGTTTAGAGGAATTATATCTTGTACCTGGCACAAGTTTAGACATAGCACTTGTTGGTGGTCCTGAACAATGGGACAAAGGTGTGGATTTCATTGAAACTGTGGAAGTTTTGGATCAAGCCAATGCTCTAGCTGAAGATGGAGTTCTTGTGCAACGTGTATCTGATAGCTTCAGGAATTTGTATGGAGTTTTATGTCAAAAGCTGGGAACCTTTAAACTTCGTTTCCAACGTGGGAATTTGGTTGGGGAGGACCATCCTCTGCCTTCAGTGGCTGAAGTTTGGTTGTCTGTGATGTGTAGCATTCCTTCTTCTATTGTACTTATAGCTGATGAACCAGTGAATGAATGCAGAATAATTAAAGCTGCAGCTCAAGCTGAACGTAGTTCAGGTAGACTTCATGATGCCCCTGTTATTGTGGCAAATGGGCGCACTATTCGTGTATCTGCAGTTGGTATCAGTGATTTGGGAGAGGCTTATGCAAATTCATCTTCTCTCAATTTGAGGTGGGAACTTAGCAGTTGTGAGGGACTGGCCTACTGGGATTATGGTTTTAATATAGTGAAGTCTAACAGTTGGGAGATATTTCTGGCCTTGCAAAATGAATCAGGCTTGTGCACTGTTCGTGCTACTGTTACTGGCTTTGCTGAGAACTTGGGAGATGATACATTTCACGGGTTTACTGAAACAGAAAATGTTCTGACAGATGCAATTCATTTACAGCTTGTTTCTACCCTTAGAGTTGATCCAGAGTACAAATTGATATATTTCAATCCTGATGCAAAGGTAAACCTGACTATTGTTGGTGGGAGCTGTTTCTTGGAAGCTGTTACAAATGATTCTCAAGTTGTACAAGTTATTCAACCACCATCTGGATTTGAATGCCTACAATTGATTTTGTCCCCTAAAGGATTAGGGACAGCCAATCTGAATATATATGATATTGGACTAAATCCTCCACAAAGAGCTTCTGCACTGGTTCAAGTTGCAGATATAGAGTGGATCAAGATCATATCAGGAAAAGTGATTAGCATGATGGAAGGAAGTTTGCAAACTATTGACTTATTGGCTGGTAGTACTGGCGGAAATAGTTTTGATGCTTCTCAGTTTGTTTACATGAATCTTCATGTACACATTGAAGATAATATAATTGAGCTGGTGGATATTGACGATTTCTCAAGCCTTGTTGGTGGACATGTTAATGCACCAAGTTTTAAAATAAAAGGGAGACATCTTGGAATTACAACCCTTTATGTCAGTGCTGTACAACATTTGGGACACGTAGTACAAAGTCAAGCTATTAAGGTGGAAGTTTACGCTGCCCCAAGAATACACCCTGACAATATTTTCCTACTACCTGGTGCATCGTATGTGCTTACCATGGAAGGAGGCCCAACTCTTGGGGTTCGTGTTGAGTATGGAATTGAAAATGATAAAATTGCAAGTATTGATAGATATTCTGGACGACTCTCGGCAAGTTCTATTGGGAACACTACAATTACTGCTAGTGTCTTTGTGAATGGTAATACTGTAATTTGTGAAGCACGGAGTATTTTAAGGGTGGGAATTCCGTCTACTGTCATGTTGCATACGCAGAGTGAACAACTTGGGATTGGCCGAAAATTGCCAATTTATCCGTTATTTCCCGAGGGTACTCTGTTTTCTTTCTATGAGCTATGTAAAAATTACCAGTGGACCATTGAAGATGAAAAGGTATTGAGCTTTAAGGTGGCAGAGACCTTGCACGGGGATGGGATCCAGTTTACTACTTCAGCAAGAAGTGAAGTTAATAGTTATTTTGATGAGAATAACCTTGGCTTTATTAATGTCTTGTATGGAAGATCTCCAGGCAAGACCAATGTTGCTGTGTCTTTCTCGTGTGAACTTTCAACTTCTGGGTCAAGGGCACAGTCCATGTTTTACAGTTCATCTTTGTCAGTAACAGTGATTCCTGATCTTCCACTGGCTTTGGGAATCCCCATGACCTGGATTCTTCCTCCCTACTATACAATGACGAACCGTTTGCCTTCATTGTCGGAATCCTATGCACAATATGATAGTCGAAATCGCAGGGGAACCATCAGCTATTCTTTATTGAGAAGTTTAGAGAAAAACGATGCTATGCAAAAAGATGCCATATTCATTGACGGGGACAGAATTAAAACTACCAAAAGTAATAATCTTGCTTGTATTCAAGCTAAAGATCGTACTACAGGAAGAACAGAGATTGCTTCTTGTGTCAAGGTTTCTGAGGTGACTCAAATTAGAATAGCCAGTAAGGAGGTTCTCCTCAATGTGATTAACCTTGCTGCTGGTGCAGAACTTGATCTTCCAACAAACTTTTATGATGCTTTAGGAAATCCTTTCCACGAAGCCTACAATGCTGTGCCTTTTCATGCTGAAACTAACTACCCTGATGTTCTCTATGTAAACAAAACAGCTGATGGAAAAGGCAATGTCCATATCAAGGCAATTCGGCATGGTAATGTTCTTGTGCGTATATCAATTAGTGAAGATCTGCAGAAATCAGATTATGTGCTGATTAGAGTGGGTGCCCATATATATCCGCAAAATCCAGTTCTTCACATAGGAAGTCCTCTTAACCTAAGCATAAAAGGTTTGAGTGATACAGTTTCTGGACAGTGGTTTACTACAAATAGAAGTGTAGTATCCGTTGATACACTATCTGGGACGGCCAAAGCTATTGGGCAAGGTTCAGCCCAAGTATCTTTCCGTTATGGAGGATCAAAACTGCAAACAACAATTACAGTGTTGAAAGGAGATTATATTTCTTTGCTTGGCCCAAAGGAGATGTTAACTAATGTCCCATACCCCTCGAAAGGATACAACTTCTCCGTGAAATTCAGTAATTCCTACAGTGAATCCCTTGGTGCACCTGGAGAAAACACGAGAATTTTATTCAATTGTAGAGTAGATCCACCATATGTGGGGTACGTGAAGCCATGGCTGGATCAGGAATCTGGCAATTCATATTGCTTATTTTTCCCTTACTCACCGGAGCATTTGGTGCACTCAGTACCTAAGTTAGAAGGCATGAGGCCAGATGTATCAGTCTCCATTTCTGCTTCTCTTGAAAATGAACATATATCTGGATCTGCTTCAGCACTTTTTATTGGCGGATTTTCTATAATGGAGATGAGCAAGAATCCGTTGCTGCTGAATCTGACACCAGGCTCAAACAAAACTGCCATTACCATATTGGGAAATACTGATGTTGAAATTCACTGGCATCATCGAGATTTGATTATGATCAGTCTCATCCACAGAGAAGATATTGGCATTCGTGGGTATGCACGGTATGAGGTTCAACTTCTGAAAGCCAAGAGATTCAGAGACAAAATCCGCATCACACTTCCAGCTAATGGCCAGAGTGTGGAAATAGACGTCAACCATGAACCTGAGGAAACAGCACCATCCAGCATAGCCATAAATAAAGCCTTCTGGGGAAGTATTCTGGGATGTTTTCTGCTGTTGATTTTATCAATCGTTATCTTCACACGTTTCTTCGAGAAACCAGAGAGATCTCAGCAAACAAGTTCCTCGGTTACTACAACTACAAGCATTGCAGCTCCCATAACTCCTGATAGAAGCAACCCGTCTGCTGTAAATGAAATGTCTCCGCGAACACCTCAACCATTTGTAGACTATGTGAGGAGAACCATCGACGAAACTCCATATTATAAGCGAGAAGGGAGAAGAAGGAAAATATTTATAGGTGGTTTAGCGAGAGAAACGACCATTGCTCAATTTATTAAGCACTTTGGGAAATATGGTGAGATCACGGATTCGGTCATCATGAAGGACAGGAAAACTGGGCAACCTCGCGGATTCGGGTTTATAACGTACGCCGATCCCTCGGTGGTTGATAAAGTCATTGAGGATCCTCACGTCATCAATGGAAAACAAGTTGAGATTAAGCGGACGATACCAAGGGGAGCTGTTGGCTCTAAGGATTTTAGGACAAAGAAAATTTTTGTAGGTGGAATTCCTTCAAATGTGACTGAAGATGAATTCAGAGACTTCTTTACTCGCTATGGTGAAGTAAAAGATCACCAAATAATGCGGGACCACTCCACCAACAGATCTCGTGGCTTTGGGTTTATCACATTTGATTCTGAAGAAGCAGTTGATGATCTTCTATCCATGGGGAACAAAATTGAATTTGCTGGAGCTCAGGTGGAAATCAAGAAGGCTGAACCAAAGAAGCCAAACTCGGCACCTCCATCATCCAAGCGCTACAATGACTCAAGATCTTCATACGGTGGTGCTGGATATGGAGATGCCTATGATGGATTTGGTGGCAATTTTGGAGTTGGGGGTGGTTATAGATCAGGTGGTGCTTATGGTGGCGGTAGGGGTGGTGCTTATGGTGCCTATGGAAGTGAATTTGGTGGTTATGGAGGATATGCTGGTGCGATGGGACCGTACAGAGGAGATCCCTCCCTCGGTTATGCTGGTCGATATGGTGGAAGCTTTAGTAGAGGGTATGATCTTGGTGGGTATGGTGGACCTAGTGAGAATTATGGGGCATATGGTGGGGGTGGTGGTTCTTCTGGTGGTGCTGGTGCCGGTGCCTATCAAAGTGGCTATGATGGCAGCCTAGGAGGTGGATATGGAGGGACTAGTGGGGGTCCCTTCTATGGGAGCAGTAGAGGTGGTTATGGTGCTGGCCGATACCATCCTTATGGAAGATAA 6831 0.4197 MTIVALLLSFLVAVTVVVSPSHAASSGPHIADVNLLLPPKMTYPVDYRLQGSDGCFQWSWDHHDILSVEPEYNSTSKCSTSARIRSISPYSVRKETAVYAADLKTGIVIRCKVFIDNISRIQIFHNSIKLDLEGLATLRVRAFDNEENVFSSLVGLQFMWSLMPEANGLPHHLVNVPLKDSPLSDCGGLCGDLDIQIKLEDNGVFSDLFVVKGIEIGHEIVSVRLLETQLKNLADEIVLTVAEAMSLDPPSPVLVLVGAVIPYTLKVIRGNVPEVVTLPSPHHQWSVSNASVAQVDSKTGLAYAWNLGMTAVIVEDTRIAGHEQVSSLNVVLPSSLCLYISPLSSSGDPVEGVKSNPLMTRWYVISGHQYLIQIKVFAQDHPAQEIYITENDDVKVYDNDSDQYWKTFFVSNDIAVKHGWRNSKILEAYSPGLGKLTASLSYPGGADDKKEIIKAVQEIMVCDKVKFTLDNDSGMILLPWSTGVYQEVELKATGGCAKTVSDFRWLSSDSSTVSVTAFGIVQAKKPGKATIKVLSVYDSLNYDEVLVEVSIPSSMVVLHNFPVETVVGSYLKAAVTMKAANGSFFYVCDAFNSLIKWKSGSESFVIVNATQELLYLKTEPNTQLRSSVNGSPCSWTYVLASHPGQAVIQAIFSKEDHHHSHSPVGLKASLRIAAYRPLIVRQAGDGNQFGGYWIDSAQAENDKQSHGLEELYLVPGTSLDIALVGGPEQWDKGVDFIETVEVLDQANALAEDGVLVQRVSDSFRNLYGVLCQKLGTFKLRFQRGNLVGEDHPLPSVAEVWLSVMCSIPSSIVLIADEPVNECRIIKAAAQAERSSGRLHDAPVIVANGRTIRVSAVGISDLGEAYANSSSLNLRWELSSCEGLAYWDYGFNIVKSNSWEIFLALQNESGLCTVRATVTGFAENLGDDTFHGFTETENVLTDAIHLQLVSTLRVDPEYKLIYFNPDAKVNLTIVGGSCFLEAVTNDSQVVQVIQPPSGFECLQLILSPKGLGTANLNIYDIGLNPPQRASALVQVADIEWIKIISGKVISMMEGSLQTIDLLAGSTGGNSFDASQFVYMNLHVHIEDNIIELVDIDDFSSLVGGHVNAPSFKIKGRHLGITTLYVSAVQHLGHVVQSQAIKVEVYAAPRIHPDNIFLLPGASYVLTMEGGPTLGVRVEYGIENDKIASIDRYSGRLSASSIGNTTITASVFVNGNTVICEARSILRVGIPSTVMLHTQSEQLGIGRKLPIYPLFPEGTLFSFYELCKNYQWTIEDEKVLSFKVAETLHGDGIQFTTSARSEVNSYFDENNLGFINVLYGRSPGKTNVAVSFSCELSTSGSRAQSMFYSSSLSVTVIPDLPLALGIPMTWILPPYYTMTNRLPSLSESYAQYDSRNRRGTISYSLLRSLEKNDAMQKDAIFIDGDRIKTTKSNNLACIQAKDRTTGRTEIASCVKVSEVTQIRIASKEVLLNVINLAAGAELDLPTNFYDALGNPFHEAYNAVPFHAETNYPDVLYVNKTADGKGNVHIKAIRHGNVLVRISISEDLQKSDYVLIRVGAHIYPQNPVLHIGSPLNLSIKGLSDTVSGQWFTTNRSVVSVDTLSGTAKAIGQGSAQVSFRYGGSKLQTTITVLKGDYISLLGPKEMLTNVPYPSKGYNFSVKFSNSYSESLGAPGENTRILFNCRVDPPYVGYVKPWLDQESGNSYCLFFPYSPEHLVHSVPKLEGMRPDVSVSISASLENEHISGSASALFIGGFSIMEMSKNPLLLNLTPGSNKTAITILGNTDVEIHWHHRDLIMISLIHREDIGIRGYARYEVQLLKAKRFRDKIRITLPANGQSVEIDVNHEPEETAPSSIAINKAFWGSILGCFLLLILSIVIFTRFFEKPERSQQTSSSVTTTTSIAAPITPDRSNPSAVNEMSPRTPQPFVDYVRRTIDETPYYKREGRRRKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDPHVINGKQVEIKRTIPRGAVGSKDFRTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFITFDSEEAVDDLLSMGNKIEFAGAQVEIKKAEPKKPNSAPPSSKRYNDSRSSYGGAGYGDAYDGFGGNFGVGGGYRSGGAYGGGRGGAYGAYGSEFGGYGGYAGAMGPYRGDPSLGYAGRYGGSFSRGYDLGGYGGPSENYGAYGGGGGSSGGAGAGAYQSGYDGSLGGGYGGTSGGPFYGSSRGGYGAGRYHPYGR 2276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium211g00012 2276 Gene3D - 2027 2141 IPR012677 -
Vium211g00012 2276 Pfam Bacterial Ig-like domain (group 2) 1148 1209 IPR003343 -
Vium211g00012 2276 Pfam Bacterial Ig-like domain (group 2) 488 535 IPR003343 -
Vium211g00012 2276 MobiDBLite consensus disorder prediction 2257 2276 - -
Vium211g00012 2276 SMART rrm1_1 1947 2018 IPR000504 GO:0003723
Vium211g00012 2276 SMART rrm1_1 2035 2108 IPR000504 GO:0003723
Vium211g00012 2276 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1946 2022 IPR000504 GO:0003723
Vium211g00012 2276 SUPERFAMILY RNA-binding domain, RBD 1922 2024 IPR035979 GO:0003676
Vium211g00012 2276 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1948 2014 IPR000504 GO:0003723
Vium211g00012 2276 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2036 2104 IPR000504 GO:0003723
Vium211g00012 2276 Gene3D - 450 553 - -
Vium211g00012 2276 Gene3D - 1944 2025 IPR012677 -
Vium211g00012 2276 CDD RRM2_Hrp1p 2035 2113 - -
Vium211g00012 2276 SUPERFAMILY Invasin/intimin cell-adhesion fragments 476 549 IPR008964 -
Vium211g00012 2276 MobiDBLite consensus disorder prediction 1887 1919 - -
Vium211g00012 2276 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2034 2112 IPR000504 GO:0003723
Vium211g00012 2276 SUPERFAMILY RNA-binding domain, RBD 2031 2138 IPR035979 GO:0003676
Vium211g00012 2276 MobiDBLite consensus disorder prediction 1887 1921 - -
Vium211g00012 2276 MobiDBLite consensus disorder prediction 2109 2130 - -
Vium211g00012 2276 PANTHER NUCLEAR PORE MEMBRANE GLYCOPROTEIN GP210-RELATED 11 1922 IPR045197 -
Vium211g00012 2276 FunFam Heterogeneous nuclear ribonucleoprotein 1 1945 2027 - -
Vium211g00012 2276 SMART bid_2 1553 1628 IPR003343 -
Vium211g00012 2276 SMART bid_2 1143 1219 IPR003343 -
Vium211g00012 2276 SMART bid_2 471 547 IPR003343 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium211g00012 Vium-Chr211 58851 97768 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium211g00012 1948 2113 Eukaryotic Initiation Factors Gene Family AT1G71770 26.136 1.32e-09 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium211g00012 K14314 - gmx:100778001 3373.56