LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium211g00004	ATGGAGTCTCCTGTTAATGGAGTTGATTCCTTGTCAGAGGTTCAGAATTCAGTTTCTGAGGTAAATCATGACCCTCTTTCATCTGGGCCTCCCCTACCTTCGCGGCCTCCCCTGAGAGCATCTAGAAACTATGATGGTGGTCATGAAACTAAGATCATCCACCATCAAAACAGTCATGTAATTAATCAAAAGCATTCCCACGAAGAGGGCAATAACTTGAAGAAAGAAGGGTTGGCAACAAAATTGTCCAGCAAGCAGCCACCACTTGATGATTTCAAGGGTTGTGAGTCAAGTGGTGTGTTAGTGTTAGAATCCGAGAGGAAAGGAACAGTTGATAATCATGCAAAGAGCCACTGTCAGCCAGAGGCTACATTCTGCCAAAGTCCTCAGAATAGTTTCTATTCAGCCACTGTCTACTCAGAAGCCAAAGGAAGTTTCACCAACACTGAAGTCAGTGAATGTGCTAGTGTTGACAAATCATGTGAAAGTGAAGAAGTGGCGAATTCCAGTGATTTTAATGAGAGCAGGAAGACAAGCATATGTAGAGCAAGTACTGGCAGTGATGCTAGTGATGAGAGCAGCACCACTAGTTTGAGCAGTGTTTTGTATAAACCTCACAAGGCAAATGACATAAGATGGGAGGCTATTCAAGCTGTTCGAATCAGAGATGGGATGTTGGAAATGAAGCATTTCAGGTTGTTGAAGAAATTGGGGTGTGGAGACATAGGGAGTGTGTATCTGGCTGAACTGAGTGGCACAAGAACTTCTTTTGCCATGAAGGTCATGAACAAGACCGAGCTGGCGAACCGCAAGAAGCTCCTGAGGGCTCAGACAGAGAGAGAGATATTAGAGTCCTTAGATCATCCTTTTCTACCTACATTGTATACTCACTTTGAGACAGAAACATTTTCCTGCTTGGTAATGGAGTTCTGCCCTGGTGGGGACCTGCATGCGCTCAGGCAAAGACAACCAGGGAAGTATTTTTCAGAGCATGCAGTCAGGTTTTATGTGGCAGAAGTTCTCCTTGCTTTGGAGTACTTGCACATGCTAGGGATCATCTACAGAGACCTGAAACCTGAGAATGTGTTGGTGAGAGAAGATGGTCACATAATGCTTTCAGACTTTGATCTCTCTCTAAGGTGCACTGTCAGTCCAACTCTAGTGAAGTCATCAAACAACTTGGAGACCAAAAGCTCAGGATACTGCGTTCAGCCTTCCTGCATCGAGCCGACATGCGTGATGCAGCCGGACTGCATCCGGCCGTCGTGCTTCACACCGCGCTTTCTATCCAGAAAATCCAAGAAAGACAAAAAGTCTAAACCAAAGAATGATGTGCACAACCAGGTGACCCCTCTTCCTGAGCTAATTGCCGAGCCAACAAATGCAAGATCAATGTCCTTTGTTGGAACACACGAGTACTTGGCCCCAGAGATCATCAAGGGTGAAGGGCATGGAAGTGCTGTGGACTGGTGGACATTTGGGATATTCCTTTATGAGCTTTTGTTTGGTAGAACACCATTCAAAGGTCCTGCAAACCGTGCAACTCTGTTCAATGTAATTGGTGAGCCTCTAAGGTTTCCAGAATCTCCAACTGTTAGCTTTGCTGCCAGAGATTTGATCAGAGGGTTGCTTGTGAAGGAGCCTCAGCATCGTCTCGCCTATAGGCGTGGTGCCACAGAGATCAAACAACATCCATTCTTTCAGAATGTTAACTGGGCACTCATCCGTTGTGCAAATCCTCCAGAGGTGCCAAGGCAGGTTATGAATCTTCCTCAAACGGAAAAGGACCTTGGTGTGAAGCCTTCTGGTAATTATTTAGATATTGATTTCTTCTGA	1836	0.4548	MESPVNGVDSLSEVQNSVSEVNHDPLSSGPPLPSRPPLRASRNYDGGHETKIIHHQNSHVINQKHSHEEGNNLKKEGLATKLSSKQPPLDDFKGCESSGVLVLESERKGTVDNHAKSHCQPEATFCQSPQNSFYSATVYSEAKGSFTNTEVSECASVDKSCESEEVANSSDFNESRKTSICRASTGSDASDESSTTSLSSVLYKPHKANDIRWEAIQAVRIRDGMLEMKHFRLLKKLGCGDIGSVYLAELSGTRTSFAMKVMNKTELANRKKLLRAQTEREILESLDHPFLPTLYTHFETETFSCLVMEFCPGGDLHALRQRQPGKYFSEHAVRFYVAEVLLALEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCTVSPTLVKSSNNLETKSSGYCVQPSCIEPTCVMQPDCIRPSCFTPRFLSRKSKKDKKSKPKNDVHNQVTPLPELIAEPTNARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGPANRATLFNVIGEPLRFPESPTVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFQNVNWALIRCANPPEVPRQVMNLPQTEKDLGVKPSGNYLDIDFF	611

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium211g00004	611	FunFam	serine/threonine-protein kinase D6PK-like	462	585	-	-
	Vium211g00004	611	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	352	364	IPR008271	GO:0004672\|GO:0006468
	Vium211g00004	611	Pfam	Protein kinase domain	464	567	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium211g00004	611	Pfam	Protein kinase domain	232	385	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium211g00004	611	CDD	STKc_phototropin_like	229	585	-	-
	Vium211g00004	611	FunFam	Serine/threonine-protein kinase D6PK-like	229	314	-	-
	Vium211g00004	611	Gene3D	Transferase(Phosphotransferase) domain 1	315	384	-	-
	Vium211g00004	611	SMART	serkin_6	231	567	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium211g00004	611	Gene3D	Phosphorylase Kinase; domain 1	229	314	-	-
	Vium211g00004	611	Gene3D	Transferase(Phosphotransferase) domain 1	461	585	-	-
	Vium211g00004	611	ProSiteProfiles	Protein kinase domain profile.	231	567	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium211g00004	611	MobiDBLite	consensus disorder prediction	1	24	-	-
	Vium211g00004	611	PANTHER	FLIPPASE KINASE 1-RELATED	86	589	-	-
	Vium211g00004	611	SUPERFAMILY	Protein kinase-like (PK-like)	206	589	IPR011009	-
	Vium211g00004	611	MobiDBLite	consensus disorder prediction	1	47	-	-
	Vium211g00004	611	FunFam	serine/threonine-protein kinase D6PK-like	315	382	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium211g00004	Vium-Chr211	31584	35647	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium211g00004	139	611	AGC Kinase Gene Family	AT5G47750	70.732	0.0	704

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Vium211g00004		Pkinase	1.4e-37	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium211g00004	K08286		-	gmx:100810909	1041.57