Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium211g00002 ATGGAAAAAGAGGTTGTGGAAAGTCTTTGGAATGGTGATGGAGAATCTCAAATTCAAGCAACTTTGGAGCTTTGCAGATTAAGCAGTAAGCAGAGGCACAAGTTGGAAGAAAGTAGAGTCATGGTTCCTCTTATTTCCATGCTTCATTCTGAAAACTATGAAGCAATAGAAGCTGCTCTGTGTGCTTTGCTCAGTCTTTCCTTTGGCTCTGAGAGAAACAAGATTCGGATCATCAAATATGGAAGTTTGCCAGTTCTGCTGAGTCTCCTCCATTGTGATAGCCAGAGAGCAGCAGACTTGACTTTGGCAGCCATGCTTACTCTCTCTTCTTGCAAAGCAAATAAGGTAGCAATTGCTTCTTCTGGGGCTGTTCAAATCTTGGTTGGGTTTGTAAACAACAGCAATTATAGCACTCAGTCTCAGCTTGATGCTATTGCTACTCTGCAGAATCTTACAACGTGCAAAGAGATTGTTCCACTGATTGTGTCTTCTGGGGTTATGCTCTCCTTGCTTGAACTGATCCACACCTCAGTAAAATCATCTCCATTGGTTGAGAAAGCAATTGGGTTGCTAGAAAACCTTGTGTCTTCATCAGAGAGTGCATTATGTGAGGTTGCTAGTACTATTGGAGCAATCAGGATACTGGTTGAGACTATAGAAGATGGATCTTCACTGAGCAAAGAGTATGCAGTGTGTATACTTCTCCTTGTATGCCAGAGCTGCAGAGAGAAATATAGAGGGTTGATTTTGACAGAGGGAGTGATGCCAGGGTTGCTTCAGTTGAGTGTGGATGGAACATGGAGAGCCAAATCCATGGCTCGAGAACTGTTGTTGCTTCTGAGGGACTGCTCCAATTATAGCTCAAGATGTAAACAGATTGATCATGAGCTTATAGAAAGGATAATGGATGAAATTGAAGCAGAAGGAGAGGAATTGGCAGATACTACTTTGAGGCTGGTAGAGGAGATGATTGCAAAGCTCCATGCTTAA 990 0.4263 MEKEVVESLWNGDGESQIQATLELCRLSSKQRHKLEESRVMVPLISMLHSENYEAIEAALCALLSLSFGSERNKIRIIKYGSLPVLLSLLHCDSQRAADLTLAAMLTLSSCKANKVAIASSGAVQILVGFVNNSNYSTQSQLDAIATLQNLTTCKEIVPLIVSSGVMLSLLELIHTSVKSSPLVEKAIGLLENLVSSSESALCEVASTIGAIRILVETIEDGSSLSKEYAVCILLLVCQSCREKYRGLILTEGVMPGLLQLSVDGTWRAKSMARELLLLLRDCSNYSSRCKQIDHELIERIMDEIEAEGEELADTTLRLVEEMIAKLHA 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium211g00002 329 FunFam U-box domain-containing protein 4 3 198 - -
Vium211g00002 329 Gene3D - 2 203 IPR011989 -
Vium211g00002 329 Gene3D - 204 315 IPR011989 -
Vium211g00002 329 SMART arm_5 70 110 IPR000225 GO:0005515
Vium211g00002 329 SMART arm_5 28 68 IPR000225 GO:0005515
Vium211g00002 329 SMART arm_5 111 153 IPR000225 GO:0005515
Vium211g00002 329 SMART arm_5 154 196 IPR000225 GO:0005515
Vium211g00002 329 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 165 200 IPR000225 GO:0005515
Vium211g00002 329 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 122 166 IPR000225 GO:0005515
Vium211g00002 329 SUPERFAMILY ARM repeat 4 312 IPR016024 -
Vium211g00002 329 PANTHER U BOX DOMAIN-CONTAINING 4 283 - -
Vium211g00002 329 FunFam U-box domain-containing protein 4 202 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium211g00002 Vium-Chr211 24482 26376 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium211g00002 4 282 U-box Gene Family AT3G54790 32.862 7.93e-28 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium211g00002 - - gmx:100778534 521.161