Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium210g00042 ATGCAAGCTGCTCAACCATCACTCACTGATGAAGCTCCCGAGATTTCCCATCAGGGTGTCCCACTGGGAAACAAAGAAGTTTCAGATAGTGGACCCAATGGTAGGCGCCCTGATATTTCACTTCAAGTTCCTCCTAGACCTATAGGGTTTGGGAGCACTAGTGGTGGGAGGGTTCTGGACCATTCTCAAAGTTTCAGCAAAGGGATATCATCATCAAGAGGCTTCTTGCGGGCCTTGAGCTTCAAAAGAAAAGGAAATGTAGGAGATGGGGAAAGAAGCAGCCTACTTAGTTCAGACCCCAAGACAGCTGCAGACAGTTCTAATATGGCCTCCATATCTGAAATTGCATGGAAAAGATGCACTTCACTTCCTGTTACACCAGCATCAAATCTGTCTCCTTCAGTTGCTACACCCATTTCTGCAAGGACATATAATGAACAAACTAAGCCACATAAAGACGTTGATCGTTCCAAGGTTTCAAGGTCCCTTTCTGTACCTGGACGAAATGTTGTTATTGTAAGATCTGTCTCTTTTTCTACCCGTAATGAACAGGAGCAACAAGATCAAAATGAAGATCAAATAACTCCTGTGCCAGTAGAAGTTACTGCCGATGAAGAAATTCCTGAAGAGGAAGCTGTGTGCAGGATATGTTTCGATGTGTGTGATGAAAGGAATACCTTTAAAATGGAATGCAGTTGCAAAGGTGACCTGAGATTGGTGCATGAAGAATGTTTAATTAAATGGTTTAGCAACAAAAGCGACAAGAAATGTGATGTATGTAGGCAAGAGGTTCAGAATTTACCTGTAACTTTGCTTCGTGTGACAAGCTCTGTTCAACGACAAAACAGACAGATGCAAGGGCAGAACCTACATCCAGAGTCAATAAGCGCATGGCAAGACTTTGTGGTGCTTGTCCTGATCAGCACAATATGCTACTTTTTCTTCCTTGAACAGCTACTGCTTCCTGAATTGAAGACTCAAGCTATTATTATTGCAGCACCATTTGCCTTTACCTTGGGCCTCCTAGCTTCTATTTTTGCAGTCATTCTGGCAATTAAGGAGTATATATGGACATATGCTGCTCTCGAGTTTGCCCTTGTAGCTTTAACTGTGCATCTATTTTATACAATGTTGCATTTGATGGCCATATATGCCATACTACTTTCATCAGTTTTGGGTTTTGGAATTGCTATGGCCATCAACTACGCATATATCCAATTTGTCACCTGGAGGCTTCAAGTCTCTTATGATGATAATCCTGTATGA 1266 0.4218 MQAAQPSLTDEAPEISHQGVPLGNKEVSDSGPNGRRPDISLQVPPRPIGFGSTSGGRVLDHSQSFSKGISSSRGFLRALSFKRKGNVGDGERSSLLSSDPKTAADSSNMASISEIAWKRCTSLPVTPASNLSPSVATPISARTYNEQTKPHKDVDRSKVSRSLSVPGRNVVIVRSVSFSTRNEQEQQDQNEDQITPVPVEVTADEEIPEEEAVCRICFDVCDERNTFKMECSCKGDLRLVHEECLIKWFSNKSDKKCDVCRQEVQNLPVTLLRVTSSVQRQNRQMQGQNLHPESISAWQDFVVLVLISTICYFFFLEQLLLPELKTQAIIIAAPFAFTLGLLASIFAVILAIKEYIWTYAALEFALVALTVHLFYTMLHLMAIYAILLSSVLGFGIAMAINYAYIQFVTWRLQVSYDDNPV 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium210g00042 421 MobiDBLite consensus disorder prediction 91 107 - -
Vium210g00042 421 PANTHER OS02G0165000 PROTEIN 60 417 - -
Vium210g00042 421 MobiDBLite consensus disorder prediction 1 68 - -
Vium210g00042 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 269 IPR013083 -
Vium210g00042 421 SMART ringv_2 213 261 IPR011016 GO:0008270
Vium210g00042 421 SUPERFAMILY RING/U-box 210 264 - -
Vium210g00042 421 Pfam RING-variant domain 214 260 IPR011016 GO:0008270
Vium210g00042 421 MobiDBLite consensus disorder prediction 86 107 - -
Vium210g00042 421 ProSiteProfiles Zinc finger RING-type profile. 214 261 IPR001841 -
Vium210g00042 421 CDD RING_CH-C4HC3_MARCH 214 261 - -
Vium210g00042 421 ProSiteProfiles Zinc finger RING-CH-type profile. 206 267 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium210g00042 Vium-Chr210 241260 245968 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium210g00042 152 320 C3H Transcription Factor Family AT2G37950 25.683 1.60e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium210g00042 - - vun:114188987 780.015