LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium210g00036	ATGAACCAGTACCACATTTACGAAGCCATCGGTCGCGGCAGATACTCCACCGTTTACAAAGGCAGGAAGAAGAAGACTATCGAATATTTCGCCATCAAGAGTGTTGATAAATCGCAAAAAACTAAGGTTCTTGAAGAGGTCAGGATTCTTCACACGTTGGATCATATAAATGTGCTGAAGTTTTATGATTGGTATGAAACTTCTGCTCATTTATGGTTGGTTTTAGAGTATTGCGTAGGAGGGGATTTGCTCTCCATATTGCGACAGGATAGTAAATTTCCAGAAGAGTCTGTTCACGATCTTGCTCTTGATTTACTGAAAGCTTTACAGTTTTTACACTCAAATGGAATAATTTATTCCGACTTGAAACCATCCAATATTCTACTGGATGAAAATGGATGCGCAAAGCTATGTGATTTTGGATTAGCGAAGAAATTGAGAGATATAACAAAAGGTTTTTCTTCTTCGTTACCACGAGCAAAACGCGGAACACCTTCCTACATGGCTCCGGAGCTTTTTGAAGATGGTGGAGTGCATTCTTACGCTTCTGACCTCTGGGCATTAGGATGTGTCTTATATGAATGTTATGCTGGGAGACCACCCTTTGTAGGAAGGGAATTTACTCAGCTTGTAAAATCTATCATTTCAGATCCTACTCCACCACTTCCGGGTAATCCCAGCAGACCTTTTGTTAATTTAATTAATTCCCTTTTGGTAAAGGATCCAGCTGAAAGAATACAATGGTCTGAGCTTTGTGGACATGCCGTTTGGAGAACAAAAGTTCCTCCGGTGCCTCTTCCTGCTCAACCTGCATTTGATGATATGGTAGAGCTACACACTAGATCTGTCTTATCAGAAAATAAATCTTCGCATAACAGGACACCTCCCAAATATCGTGAAAAGGATGTCAAAGGGGTCTTGAAGAAAGATGAAAACTCTATTTTAGGATCTAGAGGCCTTGAGACACCAACAAGGGCAACACCAAATGGCCCCAGAACTCAGATAAAAGGGTCTGGTAGAACAAATGACGTAAAGCAGAAAGATCATTCTAATATTAGCAAGGGTGTGAATCTATTAAGATTGTCAAGAATAGCAAAAACAAATTTACAGAGGGAAAATGAGAAAGAAAACTATCGACGCCCCTTGCCTAATAACTCTGAGAATGATTCTGAAGTTAAAATTGAGAACACTGACATGGAACTTGATTTTAATGAGAATACCGAAGATGATACACATGAAGAAGCTGATGGCAACGAACCTGGTGAAAAAATAGACCATCATTTTCTGAATCAGGGAAAAACAGAGGAGATTGAAAATAGTGCACACCAGTTCGATACCCCATCTGCTGTTAACCCTGCCGTCTCAGATGATCTTCATGAATTAACTCCTGACATGTCTGGTATTTCTCCCAGTGTGAGCCCTCAGGTGAAGAAGCATAGAGCTAAAGAAGACTCAGGATCTGGCCTTGACTCTGATTCTTCAAGGTTGTCTAGCAACCTTTCCCAGGTTCTTTGGCATCCATCTGATCTCTCAGTCAGACCTGTAATGCCTAGCAGAAAAGTTGATAAAGTCTTAGAAGTCATTCCTTCACTCCCTTTTGAGGCATTGCAAGCGTCTGATTTTGTTAAGATGCCTAAAGAGAAATTGGAGGCAGTCCACAACCGGATATTAGCCATTTTGAACGGAAATACCAGCATTGGAGAGAAACAAAATGTGATTAGGTACCTCGAGATGTTGAGCATTAACGCTGATGCAGCTAATGTCTTGACCAATGGGCCAATTATGCTTACGCTTGTAAAATTGCTTCGTCAATCCAAGGCATCAGCTTTGCGTGTTCAACTTGCTTCATTGATTGGTCTGTTGATTAGGCACTCCACTTTTGTTGATGACAGTTTGTCTAATTCTGGAATTTTAGGTGCACTGACTGATGGCCTTAGAGACAGGCAGGAAAAAGTAAGGAGGTTTTCAATGGCTGCTTTGGGTGAGTTGCTATTTTATATATCCACTCAAAATGCAGACTGCAAGGATAACAATCAACTTGAATCTCCATCAAAGGACAATAGGACAACAACATATGGCTGGCAGGTTCCAAATTCGTTAATTTCGCTTGTGTCATCAATGTTGAGGAAGGGCGAGGATGATATAACTCAATTGTATGCATTGAGAACAATTGAGAATATTTGCAGTCAAGGAGGGTTCTGGGTGGGGCGATTGGCCAGTCAAGATGTTTTTAGTAATCTCTGTTATATCTATAGGGCGGCAGGGAAACAAGAGAGTATGAGGCTCACTGCAGGATCATGCTTGGTGCGCCTTGTTCGTTTTAATCCACCTAGCATTCAGTCTGTTATTGAGAAACTCTCATTCAAGGACCTAGCTTCTACTCTTGTAAAGGGAAGTCCACGAGAGCAGCAAATCAGCTTAAATCTTCTTAACATAGCAATGCTTGGGAGTCACTTGTTCACAAATATTGGAAGATACCTTGTACAACTTGCTGAGGATAAAAATCTGATCCCAAGTCTTTTGGCTCTTGTTGAGCAAGGTAGTGAAGTTTTAAGAGGAAAGGCATTAGTACTTGTGGCTCTCCTCTGTAAGCATGGCAGGAGGTGGCTTCCACACTTCTTCTGTAGTCAAAAGTTGCTTTCTGTTGTGGACAGGCTGGGAAAAGAGAAAGATGCCTATGTGAGACAGTGTTTGGATGCATTTGTGCATATTGTGGCATCTAGTATTCCTGGTTTATTGGATATAATAACAGGGGATGTCCAGCAAATGATGGGAGGAAGGCGCCATGGACACATCTCTGCCCTTACCAGCAGATCTCCAAAAGCCAACATTCATTTGTTTCCTGTTGTCCTTCATCTTCTTGGAACTTCAACTTTTAAGCACAAAGTCGTGACACCACAAGTCGTACTTCAGTTGGCGAATCTAATTAAACTTGTAGAGACACCATTTCAGGGAAGAGATGACTTCCAAATAACCCTTCTTCGAATTTTCGAGTCTCTCACAGAGGAATCTCCTATGATTCTTGTCAATGCTGACATTTTCATACGTGAAATCCTCCCTAGTTTGACTGTTCTCTACAAGGGTAACAAGGATGGTGATGCCAGGTTTTTGTGCCTTAAAATTCTTTTTGATGTGATGATCATTCTTTTGAGTGAACCAATTGAAGAAGAGCAACGATTAAAGGATCTTAAATTCATATCAAATACCCGTTTTCTTCCGCTCTATCCAACCTTGATTGAAGATGAAGACCCTATTCCTATTTATGCCCAGAAACTTCTTGTTATGCTACTGGAGTTCAGTTTTATTACAATTCCAGACATTCTACATATGAAGGCAATTTCACAATGCTTCGAGTTCTTGCTCGGTGATCTCTCAAATGCAAATGTGAATAATGTTAAACTGTGTCTTGCTCTAGCTTCTGCTCCCGAGATGGAGTCGAAATTACTCTCTCATTTAAAGGTGGTTAGGAGGATTGGCAACTTTCTTGAGTTTGTACATGCAAAGGGCATGGAAGATTTGCTGGAACCCACTCTTGGGCTGTGTAGAGCTTTTATAGCACGTTCAGTCGGCTGTGCAAAAGGCTTGAGCAGCTCAAGAGAACCAAATCTCTTAGGTGACTATCCTCCCGAGTTGAGTGGTGGTGCTGTTGATCCCCAGCAATGCATAAAAGATATCGCAGACTTTGGAAGCAATTTTGGTGTCTTGCTAGAGTTGAGTGCCTCTGCAGAAACCAGTATTGCCGATATAGCTTCTGAATGTGTTGTTTTACTGTTCAAGGCAGCTCCTAGAGAAGCCACCACTGGTATACTAACCAATCTTCCCAAGGTCACTGTGATCCTAGAGAGCTGGAATAGAGGCATTCCTCACTTGATGGTGCAGCGAATGCTTCATTCTTTAGGTTATGCTTGCAAGCAATACTTACTGCATGCAATGATATTGTCGATTTCTAAATCAGAGATTTCAAGAATTGAAGTTGTAGTTTCTGAAATCAAAAGTTCAGGTGTACCACTCTTAGCCAAAACTGCTGGGCTAGCAGCCTTGGAGTTGCAGCGGTTGCCTCGCTGCATTTGA	4071	0.4146	MNQYHIYEAIGRGRYSTVYKGRKKKTIEYFAIKSVDKSQKTKVLEEVRILHTLDHINVLKFYDWYETSAHLWLVLEYCVGGDLLSILRQDSKFPEESVHDLALDLLKALQFLHSNGIIYSDLKPSNILLDENGCAKLCDFGLAKKLRDITKGFSSSLPRAKRGTPSYMAPELFEDGGVHSYASDLWALGCVLYECYAGRPPFVGREFTQLVKSIISDPTPPLPGNPSRPFVNLINSLLVKDPAERIQWSELCGHAVWRTKVPPVPLPAQPAFDDMVELHTRSVLSENKSSHNRTPPKYREKDVKGVLKKDENSILGSRGLETPTRATPNGPRTQIKGSGRTNDVKQKDHSNISKGVNLLRLSRIAKTNLQRENEKENYRRPLPNNSENDSEVKIENTDMELDFNENTEDDTHEEADGNEPGEKIDHHFLNQGKTEEIENSAHQFDTPSAVNPAVSDDLHELTPDMSGISPSVSPQVKKHRAKEDSGSGLDSDSSRLSSNLSQVLWHPSDLSVRPVMPSRKVDKVLEVIPSLPFEALQASDFVKMPKEKLEAVHNRILAILNGNTSIGEKQNVIRYLEMLSINADAANVLTNGPIMLTLVKLLRQSKASALRVQLASLIGLLIRHSTFVDDSLSNSGILGALTDGLRDRQEKVRRFSMAALGELLFYISTQNADCKDNNQLESPSKDNRTTTYGWQVPNSLISLVSSMLRKGEDDITQLYALRTIENICSQGGFWVGRLASQDVFSNLCYIYRAAGKQESMRLTAGSCLVRLVRFNPPSIQSVIEKLSFKDLASTLVKGSPREQQISLNLLNIAMLGSHLFTNIGRYLVQLAEDKNLIPSLLALVEQGSEVLRGKALVLVALLCKHGRRWLPHFFCSQKLLSVVDRLGKEKDAYVRQCLDAFVHIVASSIPGLLDIITGDVQQMMGGRRHGHISALTSRSPKANIHLFPVVLHLLGTSTFKHKVVTPQVVLQLANLIKLVETPFQGRDDFQITLLRIFESLTEESPMILVNADIFIREILPSLTVLYKGNKDGDARFLCLKILFDVMIILLSEPIEEEQRLKDLKFISNTRFLPLYPTLIEDEDPIPIYAQKLLVMLLEFSFITIPDILHMKAISQCFEFLLGDLSNANVNNVKLCLALASAPEMESKLLSHLKVVRRIGNFLEFVHAKGMEDLLEPTLGLCRAFIARSVGCAKGLSSSREPNLLGDYPPELSGGAVDPQQCIKDIADFGSNFGVLLELSASAETSIADIASECVVLLFKAAPREATTGILTNLPKVTVILESWNRGIPHLMVQRMLHSLGYACKQYLLHAMILSISKSEISRIEVVVSEIKSSGVPLLAKTAGLAALELQRLPRCI	1356

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium210g00036	1356	SUPERFAMILY	Protein kinase-like (PK-like)	1	285	IPR011009	-
	Vium210g00036	1356	MobiDBLite	consensus disorder prediction	309	355	-	-
	Vium210g00036	1356	MobiDBLite	consensus disorder prediction	401	415	-	-
	Vium210g00036	1356	MobiDBLite	consensus disorder prediction	445	495	-	-
	Vium210g00036	1356	ProSiteProfiles	Protein kinase domain profile.	4	257	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium210g00036	1356	Pfam	Protein kinase domain	4	255	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium210g00036	1356	Gene3D	-	545	903	IPR011989	-
	Vium210g00036	1356	MobiDBLite	consensus disorder prediction	317	340	-	-
	Vium210g00036	1356	CDD	STKc_ULK4	3	257	-	-
	Vium210g00036	1356	Gene3D	Transferase(Phosphotransferase) domain 1	1	312	-	-
	Vium210g00036	1356	ProSitePatterns	Protein kinases ATP-binding region signature.	10	33	IPR017441	GO:0005524
	Vium210g00036	1356	FunFam	Aurora kinase A	1	81	-	-
	Vium210g00036	1356	SUPERFAMILY	ARM repeat	552	906	IPR016024	-
	Vium210g00036	1356	SMART	serkin_6	4	257	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium210g00036	1356	MobiDBLite	consensus disorder prediction	371	425	-	-
	Vium210g00036	1356	PANTHER	SERINE/THREONINE-KINASE ULK4-LIKE PROTEIN-RELATED	1	1353	IPR044591	GO:0000911\|GO:0000914\|GO:0008017
	Vium210g00036	1356	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	117	129	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium210g00036	Vium-Chr210	211407	218161	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium210g00036	2	258	MAP Kinase Kinase Kinase	AT3G13530	32.197	6.15e-36	147

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	ULK_ULK4	Vium210g00036		Pkinase	1.1e-64	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium210g00036	K17545		-	gmx:100817590	2377.05