Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium210g00020 ATGGGCATAATCAGAAGCATGAGATCGCGGTCGCATCGCGTCGTGCAGGAGCAAGAAGAGTGTGTTGGTGACAGCATGAGACAGAGTTGTTGGGCCAACATGCCCCAAGAGCTTCTCCGAGAGGTTCTCCTACGAATCGAGGCCTCCGAGGACACGTGGCCGCCGCGGAAGAGTGTTGTCGCCTGCGCCGGCGTTTGCCGCAGCTGGAGACAAATCACCAAAGACATTGTCAAAACACCCGAGCTTTCCTCAAAAATCACCTTCCCCATTTCTGTTAAACAGCCTGGCCCAAGGGAGAATCTCCTCCGGTGCTTTATAAAGCGCAACCGGTCAACCCAAACATACTATTTGTTTCTCAGTTTAACCAATACACTAGCCGAAGATGGGAAGTTCCTTCTGGCTGCACGCAAGTGCAGACGTCCGACATGCACAGACTATATCATCTCTCTTGATGCAGATGATATGTCAAAGGGAAGCAACTCCTATGTTGGGAAACTAAGATCAAATTTTCTTGGAACAAAGTTCACAATCTATGACAGCCAGCCACCTCACTCAGGGGCAAGGATTATGAAAAGTCGCTCCACTAGGCTGGTGAATCTAAAACAAGTTTCGCCGAAGGTCCCTACAGGCAATTATCCAGTGGCTCACATCTCATATGAATTGAATGTGCTAGGCTCCCGGGGGCCTAGGAGAATGCATTGTGTTATGGATTCCATTCCTGCCACTGCAATTGAAGCTGGAGGAGTAGCTCCTACACAGACCGAGTTTTCTCTTAACAACATAGATATGTTTCCTTCATTCCCTTTTTTCCGATCAAAATCAAATCGTGTAGAAAACACCATGTCTGGACCCCTGGTTGATCAGAAGGATGGGATGCTCGTGTTAAAAAACAAGTCTCCTAGGTGGCATGAGCAGCTCCAGTGTTGGTGCTTAAACTTTCATGGCCGGGTGACAATTGCCTCGGTTAAAAACTTTCAGCTAGTAGCTTCTGCAGAAAATGGACCTGCTGGACCAGAGCATGATAAGATTATCCTCCAATTTGGAAAAGTTGGGAAGGATTTGTTTACAATGGATTACCGATACCCTATTTCGGCCTTTCAGGCCTTTGCGATGTGCCTCAGCAGCTTTGATACCAAGATTGCTTGTGAATGA 1152 0.4757 MGIIRSMRSRSHRVVQEQEECVGDSMRQSCWANMPQELLREVLLRIEASEDTWPPRKSVVACAGVCRSWRQITKDIVKTPELSSKITFPISVKQPGPRENLLRCFIKRNRSTQTYYLFLSLTNTLAEDGKFLLAARKCRRPTCTDYIISLDADDMSKGSNSYVGKLRSNFLGTKFTIYDSQPPHSGARIMKSRSTRLVNLKQVSPKVPTGNYPVAHISYELNVLGSRGPRRMHCVMDSIPATAIEAGGVAPTQTEFSLNNIDMFPSFPFFRSKSNRVENTMSGPLVDQKDGMLVLKNKSPRWHEQLQCWCLNFHGRVTIASVKNFQLVASAENGPAGPEHDKIILQFGKVGKDLFTMDYRYPISAFQAFAMCLSSFDTKIACE 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium210g00020 383 PANTHER TUBBY-RELATED 16 381 - -
Vium210g00020 383 Pfam Tub family 92 378 IPR000007 -
Vium210g00020 383 PRINTS Tubby superfamily signature 313 329 IPR000007 -
Vium210g00020 383 PRINTS Tubby superfamily signature 295 312 IPR000007 -
Vium210g00020 383 PRINTS Tubby superfamily signature 211 238 IPR000007 -
Vium210g00020 383 PRINTS Tubby superfamily signature 340 359 IPR000007 -
Vium210g00020 383 PRINTS Tubby superfamily signature 162 186 IPR000007 -
Vium210g00020 383 PRINTS Tubby superfamily signature 146 162 IPR000007 -
Vium210g00020 383 PRINTS Tubby superfamily signature 361 383 IPR000007 -
Vium210g00020 383 FunFam Tubby-like F-box protein 88 383 - -
Vium210g00020 383 ProSitePatterns Tub family signature 1. 313 326 IPR018066 -
Vium210g00020 383 Gene3D Tubby Protein; Chain A 88 383 IPR025659 -
Vium210g00020 383 SUPERFAMILY Tubby C-terminal domain-like 80 383 IPR025659 -
Vium210g00020 383 Pfam F-box domain 31 78 IPR001810 GO:0005515
Vium210g00020 383 CDD F-box_AtTLP-like 31 75 - -
Vium210g00020 383 Gene3D - 24 84 - -
Vium210g00020 383 SUPERFAMILY F-box domain 26 75 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium210g00020 Vium-Chr210 157498 162596 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium210g00020 8 383 TUB Transcription Factor Family AT2G47900 72.559 0.0 568
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vium210g00020 Tub 7.8e-113 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium210g00020 K19600 - gmx:100778346 748.043